代表性论文与著作
A. Selected Peer-Reviewed Articles
Hu Q, Liu H, He Y, Hao Y, Yan J, Liu S, Huang X, Yan Z, Zhang D, Ban X, Zhang H, Li Q, Zhang J, Xin P, Jing Y, Kou L, Sang D, Wang Y, Wang Y, Meng X, Fu X, Chu J, Wang B,Li J. (2024). Regulatory Mechanisms of Strigolactone Perception in Rice.
Cell (In Press)
Zheng Y, Chen M, Xiong D, Meng X, Yu H, Wang H, Li J. (2024). Generation of OsGRF4 and OsSNAC1 alleles for improving rice agronomic traits by CRISPR/Cas9-mediated manipulation of transposable elements. Plant Biotechnol J. doi: 10.1111/pbi.14465.
Liu T, Liu Z, Fan J, Yuan Y, Liu H, Xian W, Xiang S, Yang X, Liu Y, Liu S, Zhang M, Jiao Y, Cheng S, Doyle JJ, Xie F, Li J, Tian Z. (2024). Loss of Lateral suppressor gene is associated with evolution of root nodule symbiosis in Leguminosae. Genome Biol. 25:250.
Huang Y, Meng X, Rao Y, Xie Y, Sun T, Chen W, Wei X, Xiong J, Yu H, Li J, Wang K. (2024). OsWUS-driven synthetic apomixis in hybrid rice. Plant Commun. doi: 10.1016/j.xplc.2024.101136.
Shi H, Yin J, Zhao Z, Yu H, Yi H, Xu L, Tong H, He M, Zhu X, Lu X, Xiong Q, Li W, Tang Y, Hou Q, Song L, Wang L, Chen X, Sun C, Li T, Fan J, Li Y, Qin P, Wang WM, Li S, Chen X, Li J, Wang J. (2024). Fine-tuning of IPA1 transactivation activity by E3 ligase IPI7-mediated non-proteolytic K29-ubiquitination during Magnaporthe oryzae infection. Nat. Commun. 15:7608.
Liu Z, Zhang J, Cai Y, Wang H, Luo M, Li J, Yu H, Meng X, Cao Y. (2024). Improving Seed Shattering Resistance in Wild O. alta Rice with Mesoporous Silica Nanoparticle Delivery Systems. Nano Lett. 24:11823-11830.
Liu T, Liu H, Xian W, Liu Z, Yuan Y, Fan J, Xiang S, Yang X, Liu Y, Liu S, Zhang M, Shen Y, Jiao Y, Cheng S, Doyle JJ, Xie F, Li J, Tian Z. (2024). Duplication and sub-functionalization of flavonoid biosynthesis genes plays important role in Leguminosae root nodule symbiosis evolution. J. Integr. Plant Biol. doi: 10.1111/jipb.13743.
Yi H, Shi H, Mao W, Yin J, Ma Y, Xu L, Jing L, He M, Zhu X, Lu X, Xiong Q, Tang Y, Hou Q, Song L, Wang L, Li W, Yu H, Chen X, Li J, Wang J. (2024). E3 ubiquitin ligase IPI1 controls rice immunity and flowering via both E3 ligase-dependent and -independent pathways. Dev. Cell. S1534-5807(24)00392-7.
Ye H, Hou Q, Lv H, Shi H, Wang D, Chen Y, Xu T, Wang M, He M, Yin J, Lu X, Tang Y, Zhu X, Zou L, Chen X, Li J, Wang B, Wang J. (2024). D53 represses rice blast resistance by directly targeting phenylalanine ammonia lyases. J. Integr Plant Biol. doi: 10.1111/jipb.13734.
Yang L, Wang B, Zhao D, Li X, Qin Y, Ouyang N, Xiao Z, Zhang Z, Galili G, Li J, Peled-Zehavi H, Wu J. (2024). Selective recognition of PTRE1 transcripts mediated by protein-protein interaction between the m6A reader ECT2 and PTRE1. Plant Commun. doi: 10.1016/j.xplc.2024.101043.
Wang H, Chen M, Zhang D, Meng X, Yan J, Chu J, Li J, Yu H. (2024).Shaping rice Green Revolution traits by engineering ATG immediate upstream 5'-UTR sequences of OsSBI and OsHTD1. Plant Biotechnol J. 22:532-534.
Yang W, Zhai H, Wu F, Deng L, Chao Y, Meng X, Chen Q, Liu C, Bie X, Sun C, Yu Y, Zhang X, Zhang X, Chang Z, Xue M, Zhao Y, Meng X, Li B, Zhang X, Zhang D, Zhao X, Gao C, Li J, Li C. (2024) Peptide REF1 is a local wound signal promoting plant regeneration. Cell. 187:3024-3038.e14.
Chang W, Qiao Q, Li Q, Li X, Li Y, Huang X, Wang Y, Li J, Wang B, Wang L. (2024). Non-transcriptional regulatory activity of SMAX1 and SMXL2 mediates karrikin-regulated seedling response to red light in Arabidopsis. Mol. Plant. 17(7):1054-1072.
Wang W, Huang L, Song Y, Gui S, Cao J, Zhang H, Du M, Chen J, Wang Z, Zhou J, Meng X, Zeng D, Li J, Wang Y. (2024). LAZY4 acts additively with the starch-statolith-dependent gravity-sensing pathway to regulate shoot gravitropism and tiller angle in rice. Plant Commun. doi: 10.1016/j.xplc.2024.100943.
Cheng Q, Li J, Wang B. (2024). ABP1/ABLs and TMKs form receptor complexes to perceive extracellular auxin and trigger fast phosphorylation responses. The Innovation Life. 2:100063.
Wang H, Zhang D, Chen M, Meng X, Bai S, Xin P, Yan J, Chu J, Li J, Yu H. (2024).Genome editing of 3' UTR-embedded inhibitory region enables generation of gene knock-up alleles in plants. Plant Commun. 5:100745.
Wang A, Jing Y, Cheng Q, Zhou H, Wang L, Gong W, Kou L, Liu G, Meng X, Chen M, Ma H, Shu X, Yu H, Wu D, Li J. (2023). Loss of function of SSIIIa and SSIIIb coordinately confers high RS content in cooked rice. Proc Natl Acad Sci USA. 120:e2220622120.
Zhang H, Yu F, Xie P, Sun S, Qiao X, Tang S, Chen C, Yang S, Mei C, Yang D, Wu Y, Xia R, Li X, Lu J, Liu Y, Xie X, Ma D, Xu X, Liang Z, Feng Z, Huang X, Yu H, Liu G, Wang Y, Li J, Zhang Q, Chen C, Ouyang Y, Xie Q. (2023). A Gγ protein regulates alkaline sensitivity in crops. Science. 379:eade8416.
Yuan K, Zhang H, Yu C, Luo N, Yan J, Zheng S, Hu Q, Zhang D, Kou L, Meng X, Jing Y, Chen M, Ban X, Yan Z, Lu Z, Wu J, Zhao Y, Liang Y, Wang Y, Xiong G, Chu J, Wang E, Li J, Wang B. (2023). Low phosphorus promotes NSP1-NSP2 heterodimerization to enhance strigolactone biosynthesis and regulate shoot and root architecture in rice. Mol Plant. 16:1811-1831.
Chao J, Wu S, Shi M, Xu X, Gao Q, Du H, Gao B, Guo D, Yang S, Zhang S, Li Y, Fan X, Hai C, Kou L, Zhang J, Wang Z, Li Y, Xue W, Xu J, Deng X, Huang X, Gao X, Zhang X, Hu Y, Zeng X, Li W, Zhang L, Peng S, Wu J, Hao B, Wang X, Yu H, Li J, Liang C, Tian WM. (2023). Genomic insight into domestication of rubber tree. Nat Commun. 14:4651.
Chen Z, Bu Q, Liu G, Wang M, Wang H, Liu H, Li X, Li H, Fang J, Liang Y, Teng Z, Kang S, Yu H, Cheng Z, Xue Y, Liang C, Tang J, Li J, Chu C. (2023). Genomic decoding of breeding history to guide breeding-by-design in rice. Natl Sci Rev. 10:nwad029.
Ma X, Nian J, Yu H, Zhang F, Feng T, Kou L, Zhang J, Wang D, Li H, Chen L, Dong G, Xie X, Wang G, Qian Q, Li J, Zuo J. (2023). Linking glucose signaling to nitrogen utilization by the OsHXK7-ARE4 complex in rice. Dev Cell. 58:1489-1501.e5.
Li X, Lei C, Song Q, Bai L, Cheng B, Qin K, Li X, Ma B, Wang B, Zhou W, Chen X and Li J. (2023) Chemoproteomic profiling of O-GlcNAcylated proteins and identification of O-GlcNAc transferases in rice. Plant Biotechnol J. 21:742-753.
Li X, Yan Z, Zhang M, Wang J, Xin P, Cheng S, Kou L, Zhang X, Wu S, Chu J, Yi C, Ye K, Wang B, and Li J. (2023). SnoRNP is essential for thermospermine-mediated development in Arabidopsis thaliana. Sci China Life Sci. 66, 2-11.
Cai Y, Huang L, Song Y, Yuan Y, Xu S, Wang X, Liang Y, Zhou J, Liu G, Li J, Wang W, Wang Y. (2023). LAZY3 interacts with LAZY2 to regulate tiller angle by modulating shoot gravity perception in rice. Plant Biotechnol J. 21:1217-1228.
Zheng R, Meng X, Hu Q, Yang B, Cui G, Li Y, Zhang S, Zhang Y, Ma X, Song X, Liang S, Li Y, Li J, Yu H, Luan W. (2023). OsFTL12, a member of FT-like family, modulates the heading date and plant architecture by florigen repression complex in rice. Plant Biotechnol J. 21:1343-1360.
Chen M, Liu G, Xiao Y, Yu H, Li J. (2023). Breeding of ZhongKeFaZaoGeng1 by molecular design. Yi Chuan. 45:829-834.
Liu S, Wang J, Song B, Gong X, Liu H, Hu Q, Zhang J, Li Q, Zheng J, Wang H, Xu HE, Li J, Wang B. (2023). Conformational Dynamics of the D53-D3-D14 Complex in Strigolactone Signaling. Plant Cell Physiol. 64:1046-1056.
Wang H, Fan X, Yu H, Li J, Cui X, Xu X. (2023). Characterization of natural rubber concerning its components and molecular weight in Taraxacum kok-saghyz Rodin using pyrolysis gas chromatography-mass spectrometry. J Sep Sci 46:e2201041.
Song X, Meng X, Guo H, Cheng Q, Jing Y, Chen M, Liu G, Wang B, Wang Y, Li J, and Yu H. (2022). Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size. Nat Biotechnol. 40: 1403-1411.
Liu H, Liu S, Yu H, Huang X, Wang Y, Jiang L, Meng X, Liu G, Chen M, Jing Y, Yu F, Wang B, and Li J. (2022). An engineered platform for reconstituting functional multisubunit SCF E3 ligase in vitro. Mol Plant. 15: 1285-1299.
Jia M, Meng X, Song X, Zhang D, Kou L, Zhang J, Jing Y, Liu G, Liu H, Huang X, Wang Y, Yu H, and Li J. (2022). Chilling-induced phosphorylation of IPA1 by OsSAPK6 activates chilling tolerance responses in rice. Cell Discov. 8: 71.
Jia M, Luo N, Meng X, Song X, Jing Y, Kou L, Liu G, Huang X, Wang Y, Li J, Wang B, and Yu H. (2022). OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice. J Genet Genomics. 49: 766-775.
Zhang J, Zeng P, Yu H, Meng X, and Li J. (2022). Protocol for genome editing in wild allotetraploid rice Oryza alta. STAR Protoc. 3: 101789.
Bi G, Hu M, Fu L, Zhang X, Zuo J, Li J, Yang J, and Zhou J.M. (2022). The cytosolic thiol peroxidase PRXIIB is an intracellular sensor for H2O2 that regulates plant immunity through a redox relay. Nat Plants. 8: 1160-1175.
Chen L, Sun S, Song C, Zhou J.M, Li J, and Zuo J. (2022). Nitric oxide negatively regulates gibberellin signaling to coordinate growth and salt tolerance in Arabidopsis. J Genet Genomics. 49: 756-765.
Zou J, Meng X, Liu Q, Shang M, Wang K, Li J, Yu H, and Wang C. (2022). Improving the efficiency of prime editing with epegRNAs and high-temperature treatment in rice. Sci China Life Sci. 65, 2328–2331.
Shang L, Li X, He H, Yuan Q, Song,Y, Wei Zh, Lin H, Hu M, Zhao F, Zhang Ch, Li Y, Gao H, Wang T, Liu X, Zhang H, Zhang Y, Cao Sh, Yu X, Zhang B, Zhang Y, Tan ,Y, Qin Mao, Ai Ch, Yang Y, Zhang B, Hu Zh, Wang H, Lv Y, Wang Y, Ma J, Wang Q, Lu H, Wu Zh, Liu Sh, Sun Z, Zhang H, Guo L, Li Z, Zhou Y, Li J, Zhu Z, Xiong G, Ruan J, and Qian,Q. (2022). A super pan-genomic landscape of rice. Cell Res. 32: 878-896.
Lin T, Xu X, Du H, Fan X, Chen Q, Hai C, Zhou Z, Su X, Kou L, Gao Q, Deng L, Jiang J, You H, Ma Y, Cheng Z, Wang G, Liang C, Zhang G, Yu H, and Li J. (2022). Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum. Sci China Life Sci 65, 515-528.
Yu H, Lin T, Meng X, Du H, Zhang J, Liu G, Chen M, Jing Y, Kou L, Li X, Gao Q, Liang Y, Liu X, Fan Z, Liang Y, Cheng Z, Chen M, Tian Z, Wang Y, Chu C, Zuo J, Wan J, Qian Q, Han B, Zuccolo A, Wing R A, Gao C, Liang C, and Li J. (2021). A route to de novo domestication of wild allotetraploid rice. Cell. 184: 1156-1170.
Luo L, He Y, Li J, and Yu H. (2021). Immunopurification of Mitochondria from Arabidopsis. Curr Protoc 1, e34.
Wu X, Liang Y, Gao H, Wang J, Zhao Y, Hua L, Yuan Y, Wang A, Zhang X, Liu J, Zhou J, Meng X, Zhang D, Lin S, Huang X, Han B, Li J, and Wang Y. (2021). Enhancing rice grain production by manipulating the naturally evolved cis-regulatory element-containing inverted repeat sequence of OsREM20. Mol Plant 14: 997-1011.
Lin Q, Jin S, Zong Y, Yu H, Zhu Z, Liu G, Kou L, Wang Y, Qiu J, Li J, and Gao C. (2021). High-efficiency prime editing with optimized, paired pegRNAs in plants. Nat Biotechnol 39: 923-927.
Liu Q, Jiao X, Meng X, Wang C, Xu C, Tian Z, Xie C, Li G, Li J, Yu H, and Wang K. (2021). FED: a web tool for foreign element detection of genome-edited organism. Sci China Life Sci 64, 167-170.
Ren J, Meng X, Hu F, Liu Q, Cao Y, Li H, Yan C, Li J, Wang K., Yu H, and Wang C. (2021). Expanding the scope of genome editing with SpG and SpRY variants in rice. Sci China Life Sci 64: 1784-1787.
Zhang R, Chen S, Meng X, Chai Z, Wang D, Yuan Y, Chen K, Jiang L, Li J, and Gao C. (2021). Generating broad-spectrum tolerance to ALS-inhibiting herbicides in rice by base editing. Sci China Life Sci 64: 1624-1633.
Wu S, Wang Y, Wang J, Li X, Li J, and Ye K. (2021). Profiling of RNA ribose methylation in Arabidopsis thaliana. Nucleic Acids Res 49: 4104-4119.
Huang L, Wang W, Zhang N, Cai Y, Liang Y, Meng X, Yuan Y, Li J, Wu D, and Wang Y. (2021). LAZY2 controls rice tiller angle through regulating starch biosynthesis in gravity-sensing cells. New Phytol 231: 1073-1087.
Wang L, Wang B, Yu H, Guo H, Lin T, Kou L, Wang A, Shao N, Ma H, Xiong G, Li X, Yang J, Chu J, and Li J. (2020). Transcriptional regulation of strigolactone signalling in Arabidopsis. Nature. 583, 277-281.
Li C, Zhang R, Meng X, Chen S, Zong Y, Lu C, Qiu J, Chen Y, Li J, and Gao C. (2020). Targeted, random mutagenesis of plant genes with dual cytosine and adenine base editors. Nat Biotechnol. 38, 875-882.
Liu X, Hu Q, Yan J, Sun K, Liang Y, Jia M, Meng X, Fang S, Wang Y, Jing Y, Liu G, Wu D, Chu C, Smith S M, Chu J, Wang Y, Li J, and Wang B. (2020). zeta-Carotene Isomerase Suppresses Tillering in Rice through the Coordinated Biosynthesis of Strigolactone and Abscisic Acid. Mol Plant 13, 1784-1801.
Wang L, Xu Q, Yu H, Ma H, Li X, Yang J, Chu J, Xie Q, Wang Y, Smith S M, Li J, Xiong G, and Wang B. (2020). Strigolactone and Karrikin Signaling Pathways Elicit Ubiquitination and Proteolysis of SMXL2 to Regulate Hypocotyl Elongation in Arabidopsis. Plant Cell 32, 2251-2270.
Chen L, Wu R, Feng J, Feng T, Wang C, Hu J, Zhan N, Li Y, Ma X, Ren B, Zhang J, Song C, Li J, Zhou J, and Zuo J. (2020). Transnitrosylation Mediated by the Non-canonical Catalase ROG1 Regulates Nitric Oxide Signaling in Plants. Dev Cell 53, 444-457.
Li R, Sun S, Wang H, Wang K, Yu H, Zhou Z, Xin P, Chu J, Zhao T, Wang H, Li J, and Cui X. (2020). FIS1 encodes a GA2-oxidase that regulates fruit firmness in tomato. Nat Commun 11, 5844.
Wang F, Han T, Song Q, Ye W, Song X, Chu J, Li J, and Chen Z. (2020). The Rice Circadian Clock Regulates Tiller Growth and Panicle Development Through Strigolactone Signaling and Sugar Sensing. Plant Cell 32, 3124-3138.
Wang W, Yang J, Zhang J, Liu Y, Tian C, Qu B, Gao C, Xin P, Cheng S, Zhang W, Miao P, Li L, Zhang X, Chu J, Zuo J, Li J, Bai Y, Lei X, and Zhou J. (2020). An Arabidopsis Secondary Metabolite Directly Targets Expression of the Bacterial Type III Secretion System to Inhibit Bacterial Virulence. Cell Host Microbe 27, 601-613.
Zhao M, Tang S, Zhang H, He M, Liu J, Zhi H, Sui Y, Liu X, Jia G, Zhao Z, Yan J, Zhang B, Zhou Y, Chu J, Wang X, Zhao B, Tang W, Li J, Wu C, Liu X, and Diao X. (2020). DROOPY LEAF1 controls leaf architecture by orchestrating early brassinosteroid signaling. Proc Natl Acad Sci USA 117, 21766-21774.
Zheng J, Hong K, Zeng L, Wang L, Kang S, Qu M, Dai J, Zou L, Zhu L, Tang Z, Meng X, Wang B, Hu J, Zeng D, Zhao Y, Cui P, Wang Q, Qian Q, Wang Y, Li J, and Xiong G. (2020). Karrikin Signaling Acts Parallel to and Additively with Strigolactone Signaling to Regulate Rice Mesocotyl Elongation in Darkness. Plant Cell 32, 2780-2805.
Hu X, Meng X, Li J, Wang K, and Yu H. (2020). Improving the efficiency of the CRISPR-Cas12a system with tRNA-crRNA arrays. Crop J 8, 403-407.
Luo L, He Y, Xu Q, Lyu W, Yan J, Xin P, Zhang D, Chu J, Li J, and Yu H. (2020). Rapid and specific isolation of intact mitochondria from Arabidopsis leaves. J Genet Genomics 47, 65-68.
Wang C, Yu H, Huang J, Wang W, Faruquee M, Zhang F, Zhao X, Fu B, Chen K, Zhang H, Tai S, Wei C, McNally K, Alexandrov N, Gao X, Li J, Li Z, Xu J, and Zheng T. (2020). Towards a deeper haplotype mining of complex traits in rice with RFGB v2.0. Plant Biotechnol J 18, 14-16.
Wang Y, Shang L, Yu H, Zeng L, Hu J, Ni S, Rao Y, Li S, Chu J, Meng X, Wang L, Hu P, Yan J, Kang S, Qu M, Lin H, Wang T, Wang Q, Hu X, Chen H, Wang B, Gao Z, Guo L, Zeng D, Zhu X, Xiong G, Li J, and Qian Q. (2020). A strigolactone biosynthesis gene contributed to the green revolution in rice. Mol Plant 13, 923-932.
Xu L, Yuan K, Yuan M, Meng X, Chen M, Wu J, Li J, and Qi Y. (2020). Regulation of rice tillering by RNA-directed DNA methylation at miniature inverted-repeat transposable elements. Mol Plant 13, 851-863.
Xu Y, Meng X, Wang J, Qin B, Wang K, Li J, Wang C, and Yu H. (2020). ScCas9 recognizes NNG protospacer adjacent motif in genome editing of rice. Sci China Life Sci 63, 450-452.
Duan J, Yu H, Yuan K, Liao Z, Meng X, Jing Y, Liu G, Chu J, and Li J (2019). Strigolactone promotes cytokinin degradation through transcriptional activation of CYTOKININ OXIDASE/DEHYDROGENASE 9 in rice. Proc Natl Acad Sci USA 116: 14319-14324.
Liao Z, Yu H, Duan J, Yuan K, Yu C, Meng X, Kou L, Chen M, Jing Y, Liu G, Smith SM, and Li J (2019). SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice. Nat Commun 10: 2738.
Shao G, Lu Z, Xiong J, Wang B, Jing Y, Meng X, Liu G, Ma H, Liang Y, Chen F, Wang Y,
Li J, and Yu H (2019). Tiller bud formation regulators
MOC1 and MOC3 cooperatively promote tiller bud outgrowth by activating
FON1 expression in rice.
Mol Plant 12: 1090-1102.
Li Z, Liang Y, Yuan Y, Wang L, Meng X, Xiong G, Zhou J, Cai Y, Han N, Hua L, Liu G, Li J, and Wang Y (2019). OsBRXL4 regulates shoot gravitropism and rice tiller angle through affecting LAZY1 nuclear localization. Mol Plant 12: 1143-1156.
Luo L, He Y, Zhao Y, Xu Q, Wu J, Ma H, Guo H, Bai L, Zuo J, Zhou JM, Yu H, and Li J (2019). Regulation of mitochondrial NAD pool via NAD+ transporter 2 is essential for matrix NADH homeostasis and ROS production in Arabidopsis. Sci China Life Sci 62: 991-1002.
Zhang R, Liu J, Chai Z, Chen S, Bai Y, Zong Y, Chen K, Li J, Jiang L, and Gao C (2019). Generation of herbicide tolerance traits and a new selectable marker in wheat using base editing. Nat Plants 5: 480-485.
Wang J, Meng X, Hu X, Sun T, Li J, Wang K, and Yu H (2019). xCas9 expands the scope of genome editing with reduced efficiency in rice. Plant Biotechnol J 17: 709-711.
Wang J, Zhou L, Shi H, Chern M, Yu H, Yi H, He M, Yin J, Zhu X, Li Y, Li W, Liu J, Wang J, Chen X, Qing H, Wang Y, Liu G, Wang W, Li P, Wu X, Zhu L, Zhou J, Ronald P, Li S,Li J, and Chen X (2018). A single transcription factor promotes both yield and immunity in rice,Science361: 1026-1028.
Wang W, Mauleon R, Hu Z, Chebotarov D, Tai S, Wu Z, Li M, Zheng T, Fuentes R, Zhang F, Mansueto L, Copettie D, Sanciangco M, Palis K, Xu J, Sun C, Fu B, Zhang H, Gao Y, Zhao X, Shen F, Cui X, Yu H, Li Z, Chen M, Detras J, Zhou Y, Zhang X, Zhao Y, Kudrna D, Wang C, Li R, Jia B, Lu J, He X, Dong Z, Xu J, Li Y, Wang M, Shi J, Li J, Zhang D, Lee S, Hu W, Poliakov A, Dubchak I, Ulat V, Borja F, Mendoza J, Ali J, Li J, Gao Q, Niu Y, Yue Z, Naredo M, Talag J, Wang X, Li J, Fang X, Yin Y, Glaszmann J, Zhang J, Li J, Hamilton R, Wing R, Ruan J, Zhang G, Wei C, Alexandrov N, McNally K, Li Z, Leung H (2018). Genomic variation in 3,010 diverse accessions of Asian cultivated rice, Nature 557, 43–49.
Zhao Y, Luo L, Xu J, Xin P, Guo H, Wu J, Bai L, Wang G, Chu J, Zuo J, Yu H, Huang X, and Li J (2018). Malate transported from chloroplast to mitochondrion triggers production of ROS and PCD in Arabidopsis thaliana, Cell Res 28, 448–461.
Wang W, Hu B, Yuan D, Liu Y, Che R, Hu Y, Ou S, Liu Y, Zhang Z, Wang H, Li H, Jiang Z, Zhang Z, Gao X, Qiu Y, Meng X, Liu Y, Bai Y, Liang Y, Wang Y, Zhang L, Li L, Sodmergen, Jing H, Li J, Chu C (2018). Expression of the Nitrate Transporter Gene OsNRT1.1A/OsNPF6.3 Confers High Yield and Early Maturation in Rice, Plant Cell 30, 638–651.
Wang Q, Nian J, Xie X, Yu H, Zhang J, Bai J, Dong G, Hu J, Bo B, Chen L, Xie Q, Feng J, Yang X, Peng J, Chen F, Qian Q, Li J, and Zuo J (2018). Genetic variations in ARE1 mediate grain yield by modulating nitrogen utilization in rice, Nat Commun 9, 735.
Yao R, Wang L, Li Y, Chen L, Li S, Du X, Wang B, Yan J, Li J and Xie D (2018). Rice DWARF14 acts as an unconventional hormone receptor for strigolactones. J Exp Bot 69, 2355-2365.
Meng X, Hu X, Liu Q, Song X, Gao C, Li J, and Wang K (2018). Robust genome editing of CRISPR-Cas9 at NAG PAMs in rice. Sci China Life Sci 61, 122-125.
Lin T, Xu X, Ruan J, Liu S, Wu S, Shao X, Wang X, Gan L, Qin B, Yang Y, Cheng Z, Yang S, Zhang Z, Xiong G, Huang S, Yu H, Li J (2018). Genome analysis of Taraxacum kok-saghyz Rodin provides new insights into rubber biosynthesis, Natl Sci Rev 5, 78-87.
Song X, Lu Z, Yu H, Shao G, Xiong J, Meng X, Jing Y, Liu G, Xiong G, Duan J, Yao XF, Liu CM, Li H, Wang Y, and Li J (2017). IPA1 functions as a downstream transcription factor repressed by D53 in strigolactone signaling in rice. Cell Res 27, 1128-1141.
Meng X, Yu H, Zhang Y, Zhuang F, Song X, Gao S, Gao C, and Li J (2017). Construction of a Genome-Wide Mutant Library in Rice Using CRISPR/Cas9. Mol Plant 10, 1238-1241.
Ma H, Duan J, Ke J, He Y, Gu X, Xu TH, Yu H, Wang Y, Brunzelle JS, Jiang Y, Rothbart SB, Xu HE, Li J, and Melcher K (2017). A D53 repression motif induces oligomerization of TOPLESS corepressors and promotes assembly of a corepressor-nucleosome complex. Sci Adv 3, e1601217.
Hu X, Meng X, Liu Q, Li J, and Wang K (2017). Increasing the efficiency of CRISPR-Cas9-VQR precise genome editing in rice. Plant Biotechnol J 3, e1601217.
Zhang L, Yu H, Ma B, Liu G, Wang J, Wang J, Gao R, Li J, Liu J, Xu J, Zhang Y, Li Q, Huang H, Xu J, Li J, Qian Q, Han B, He Z and Li J (2017) A natural tandem array alleviates epigenetic repression of IPA1 and leads to superior yielding in rice. Nat Commun 8, 14789.
Zeng D, Tian Z, Rao Y, Dong G, Yang Y, Huang L, Leng Y, Xu J, Sun C, Zhang G, Hu J, Zhu L, Gao Z, Hu X, Guo L, Xiong G, Wang Y, Li J, and Qian Q (2017) Rational design of high-yield and superior-quality rice. Nat Plants 3, 17031.
Wang J, Yu H, Xiong G, Lu Z, Jiao J, Meng X, Liu G, Chen X, Wang Y and Li J (2017) Tissue-specific Ubiquitination by IPA1 INTERACTING PROTEIN 1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice. Plant Cell 29, 697-707.
Zhou H, Wang L, Liu G, Meng X, Jing Y, Shu X, Kong X, Sun J, Yu H, Smith SM, Wu D and Li J (2016) Critical roles of soluble starch synthase SSIIIa and granule-bound starch synthase Waxy in synthesizing resistant starch in rice. Proc Natl Acad Sci USA 113, 12844–12849.
Jia W, Li B, Li S, Liang Y, Wu X, Ma M, Wang J, Gao J, Cai Y, Zhang Y, Wang Y, Li J, and Wang Y (2016) Mitogen-Activated Protein Kinase Cascade MKK7-MPK6 Plays an Important Role in Plant Development and Regulates Shoot Branching by Phosphorylating PIN1 in Arabidopsis. PLOS BIOL 14, e1002550.
Yao R, Ming Z, Yan L, Li S, Wang F, Ma S, Yu C, Yang M, Chen L, Chen L, Li Y, Yan C, Miao D, Sun Z, Yan J, Sun Y, Wang L, Chu J, Fan S, He W, Deng H, Nan F, Li J, Rao Z, Lou Z and Xie D (2016) Allosteric activation of the non-canonical hormone receptor DWARF14 by strigolactone. Nature 536, 469-473.
Xie T, Chen D, Wu J, Huang X, Wang Y, Tang K, Li J, Sun M, and Peng X. (2016) Growing Slowly 1 locus encodes a PLS-type PPR protein required for RNA editing and plant development in Arabidopsis. J Exp Bot 67, 5687-5698.
Li J, Meng X, Zong Y, Chen K, Zhang H, Liu J, Li J and Gao C (2016) Gene replacement and insertions in rice by intron targeting using CRISPR/Cas9. Nat Plants 2. 16139.
Huang S,
WeigelD, Beachy RN, and
Li J. (2016) A proposed regulatory framework for genome-edited crops.
Nat Genet 48, 109-111.
Ke J, Ma H, Gu X, Thelen A, Brunzelle J, Li J, Xu H, and Melcher K. (2015). Structural basis for recognition of diverse transcriptional repressors by the TOPLESS family of corepressors. Sci Adv 1, e1500107.
Wang L, Wang B, Jiang L, Liu X, Li X, Lu Z, Meng X, Wang Y, Smith S, and Li J. (2015). Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation. Plant Cell 27, 3128-3142.
Hu J, Wang Y, Fang Y, Zeng,L, Xu J, Yu H, Shi Z, Pan J, Zhang D, Kang S, Zhu L, Dong G, Guo L, Zeng D, Zhang G, Xie L, Xiong G, Li J, and Qian Q. (2015). A Rare Allele of GS2 Enhances Grain Size and Grain Yield in Rice. Mol Plant 8, 1455-1465.
Liu L, Tong H, Xiao Y, Che R, Xu F, Hu B, Liang C, Chu J, Li J, and Chu C. (2015). Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice. Proc Natl Acad Sci USA 112, 11102-11107.
Zhao L, Zhou X, Yi W, Wu Z, Liu Y, Kang Y, Hou L, de Waal P, Li S, Jiang Y, Scaffidi A, Flematti G, Smith S, Lam V, Griffin P, Wang Y, Li J, Melcher K, and Xu H (2015). Destabilization of strigolactone receptor DWARF14 by binding of ligand and E3-ligase signaling effector DWARF3. Cell Res 25, 1219-1236.
Wang Y, Xiong G, Hu J, Jiang L, Yu H, Xu J, Fang Y, Zeng L, Xu E, Xu J, Ye W, Meng X, Liu R, Chen H, Jing Y, Wang Y, Zhu X, Li J, and Qian Q. (2015) Copy number variation at the GL7 locus contributes to grain size diversity in rice. Nat Genet 47, 944-948.
Yu H, and Li J (2015). Plant and animal organelles in cell death. Oncotarget 6, 13852-13853.
Jing H, Yang X, Zhang J, Liu X, Zheng H, Dong G, Nian J, Feng J, Xia B, Qian Q, Li J, and Zuo, J (2015). Peptidyl-prolyl isomerization targets rice Aux/IAAs for proteasomal degradation during auxin signalling. Nat Commun 6, 7395.
Wu J, Sun Y, Zhao Z, Zhang J, Luo L, Li M, Wang J, Yu H, Liu G, Yang L, Xiong G, Zhou J, Zuo J, Wang Y, and Li J (2015) Deficient plastidic fatty acid synthesis triggers cell death by modulating mitochondrial reactive oxygen species. Cell Res 25, 621-633.
Wang B, Chu J, Yu T, Xu Q, Sun X, Yuan J, Xiong G, Wang G, Wang Y and Li J (2015) Tryptophan-independent auxin biosynthesis contributes to early embryogenesis in Arabidopsis. Proc Natl Acad Sci USA 112, 4821-4826.
Lu Z, Shao G, Xiong J, Jiao Y, Wang J, Liu G, Meng X, Liang Y, Xiong G, Wang Y, and Li J (2015) MONOCULM 3, ortholog of WUSCHEL in rice, is required for tiller bud formation. J Genet Genomics 42. 71-78.
Huang X, Yang S, Gong J, Zhao Y, Feng Q, Gong Hao, Li W, Zhan Q, Cheng B, Xia J, Chen N, Hao Z, Liu K, Zhu C, Huang T, Zhao Q, Zhang L, Fan D, Zhou C, Lu Y, Weng Q, Wang Z, Li J and Han B (2015) Genomic analysis of hybrid rice varieties reveals numerous superior alleles that contribute to heterosis. Nat Commun 6, 6258.
Sang D, Chen D, Liu G, Liang Y, Huang L, Meng X, Chu J, Sun X, Dong G, Yuan Y, Qian Q, Li J, and Wang Y. (2014). Strigolactones regulate rice tiller angle by attenuating shoot gravitropism through inhibiting auxin biosynthesis. Proc Natl Acad Sci USA 111, 11199-11204.
Cardoso C, Zhang Y, Jamil M, Hepworth J, Charnikhova T, Dimkpa S, Meharg C, Wright M, Liu J, Meng X, Wang Y, Li J, McCouch S, Leyser O, Price A, Bouwmeester H and Ruyter-Spira C (2014) Natural variation of rice strigolactone biosynthesis is associated with the deletion of two MAX1 orthologs. Proc Natl Acad Sci USA 111: 2379–2384.
Jiang L, Liu X, Xiong G, Liu H, Chen F, Wang L, Meng X, Liu G, Yu H, Yuan Y, Yi W, Zhao L, Ma H, He Y, Wu Z, Melcher K, Qian Q, Xu H, Wang Y and Li J (2013) DWARF 53 acts as a repressor of strigolactone signaling in rice. Nature 504: 401-405.
Lu Z, Yu H, Xiong G, Wang J, Jiao Y, Guifu Liu G, Jing Y, Meng X, Hu X, Qian Q, Fu X, Wang Y and Li J (2013) Genome-wide binding analysis of the transcription activator IPA1 reveals a complex network regulating rice plant architecture. Plant Cell 25: 3743-3759.
Zhu Y, Guo G, Zhang Z, Liu C, Hu Q, Lam H, Cheng H, Xue Y, Li J and Li N (2013) Stable isotope metabolic labelingbased quantitative phosphorproteomic analysis of Arabidopsis mutants reveals ethyleneregulated time-dependent phosphorproteins and putative substrates of Constitutive Triple Response 1 kinase. Mol Cell Proteomics 12, 3559-3582.
Jia G, Huang X, Zhi H, Zhao Y, Zhao Q, Li W, Chai Y, Yang L, Liu K, Lu H, Zhu C, Lu Y, Zhou C, Fan D, Weng Q, Guo Y, Huang T, Zhang L, Lu T, Feng Q, Hao H, Liu H, Lu P, Zhang N, Li Y, Guo E, Wang S, Wang S, Liu J, Zhang W, Chen G, Zhang B, Li W, Wang X, Li H, Zhao B, Li J, Diao X and Han B (2013) A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica). Nat Genet 45: 957-961.
Gao Z, Zhao S, He W, Guo L, Wang J, Peng Y, Guo X, Zhang X, Rao Y, Zhang C, Dong G, Zheng F, Lu C, Hu J, Zhou Q, Liu H, Hu X, Xu J, Zeng D, Liu D, Tian P, Gong L, Li Y, Zhang G, Wang J, Tian F, Xue D, Liao Y, Chen M, Li J, Cheng S, Zhang G, Wang J, and Qian Q (2013) Uncovering yield-associated loci in super-hybrid rice by resequencing recombinant inbred lines while improving its parental genome sequences. Proc Natl Acad Sci USA 110: 14492-14497.
Liu L, Shang-Guan K, Zhang B, Liu X, Yan M, Lanjun Zhang L, Shi Y, Zhang M, Qian Q, Li J and Zhou Y (2013) Brittle Culm1, a COBRA-Like Protein, Functions in Cellulose Assembly through Binding Cellulose Microfibrils. PLoS Genet 9: e1003704.
Zhao L, Zhou X, Wu Z, Yi W, Xu Y, Li S, Xu T, Liu Y, Chen R, Kovach A, Kang Y, Hou L, He Y, Xie C, Song W, Zhong D, Xu Y, Wang Y, Li J, Zhang C, Melcher K and Xu H (2013) Crystal structures of two phytohormone signal-transducing α/β hydrolases: karrikin-signaling KAI2 and strigolactone signaling DWARF14. Cell Res 23:436-439.
Chen L, Xiong G, Cui X, Yan Y, Xu T, Qian Q, Xue Y, Li J and Wang Y (2013) OsGRAS19 may be a novel component involved in the brassinosteroid signaling pathway in rice. Mol Plant 6: 988-991.
Zhang X, Wang J, Huang J, Lan H, Wang C, Yin C, Wu Y, Tang H, Qian Q, Li J, and Zhang H (2012) Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice. Proc Natl Acad Sci USA 109: 21534-21539.
Huang X, Kurata N, Wei X, Wang Z, Wang A, Zhao Q, Zhao Y, Lu H, Li W, Guo Y, Lu Y, Liu K, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J and Han B (2012) A map of rice genome variation reveals the origin of cultivated rice and domestication-associated genes. Nature 490: 497-502.
Xu C, Wang Y, Yu Y, Duan J, Liao L, Xiong G, Meng X, Liu G, Qian Q and Li J (2012) Degradation of MONOCULM 1 (MOC1) by APC/CTAD1 regulates rice tillering. Nat Commun DOI: 10.1038/ncomms1743.
Huang X, Zhao Y, Wei X, Li C, Wang A, Zhao Q, Li W, Guo Y, Deng L, Zhu C, Fan D, Lu Y, Weng Q, Liu K, Zhou T, Jing Y, Si L, Dong G, Huang T, Lu T, Feng Q, Qian Q, Li J and Han B (2012) Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm Nat Genet 44: 32-39.
Huang X, Wei X, Sang T, Zhao Q, Feng Q, Zhao Y, Li C, Zhu C, Lu T, Zhang Z, Li M, Fan D, Guo Y, Wang A, Wang L, Deng L, Li W, Lu Y, Weng Q, Liu K, Huang T, Zhou T, Jing Y, Li W, Lin Z, Bucker ES, Qian Q, Zhang Q, Li J and Han B (2010) Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet 42: 961-967.
Jiao Y, Wang Y, Xue D, Wang J, Yan M, Liu G, Dong G, Zeng D, Lu Z, Zhu X, Qian Q and Li J (2010) Regulation of OsSPL14by OsmiR156 defines ideal plant architecture in rice. Nat Genet 42, 541-544.
Cui X, Ge C, Wang R, Wang H, Chen W, Fu Z, Jiang X, Li J, Wang Y (2010) The BUD2 mutation affects plant architecture through altering response to cytokinin and auxin in Arabidopsis. Cell Res 20: 576-586.
Melcher K, Ng LM, Zhou X, Soon FF, Xu Y, Suino-Powell KM, Park SY, Weiner JJ, Fujii H, Chinnusamy V, Kovach A, Li J, Wang Y, Li J, Peterson FC, Jensen DR, Yong EL, Volkman BF, Cutler SR, Zhu J, and Xu E (2009). A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors. Nature 462: 602-608.
Wang H, Zhu Y, Fujioka S, Asami T, Li J, and Li J (2009). Regulation of Arabidopsis brassinosteroid signaling by atypical basic helix-loop-helix proteins. Plant Cell 21: 3781-3791.
Lin H, Wang R, Qian Q, Yan M, Meng X, Fu Z, Yan C, Jiang B, Su Z, Li J, and Wang Y (2009). DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth. Plant Cell 21: 1512-1525.
Huang X, Qian Q, Liu Z, Sun H, He S, Luo D, Xia G, Chu C, Li J, and Fu X. (2009) Natural variation at the DEP1 locus enhances grain yield in rice. Nat Genet 41: 494-497.
Li S, Qian Q, Fu Z, Zeng D, Meng X, Kyozuka J, Maekawa M, Zhu X, Zhang J, Li J and Wang Y (2009) Short panicle1 encodes a putative PTR transporter and determines rice panicle size. Plant J 58: 592-605.
Zhou Y, Li S, Qian Q, Zeng D, Zhang M, Guo L, Liu XL, Zhang B, Deng L, Liu XF, Luo G, Wang X and Li J (2009) BC10, a DUF266-containing and golgi-located type II membrane protein, is required for cell wall biosynthesis in rice (Oryza sativa L.) Plant J 57: 446-462.
Tian Z, Qian Q, Liu Q, Yan M, Liu X, Yan C, Liu G, Gao Z, Tang S, Zeng D, Wang Y, Yu J, Gu M and Li J (2009) Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities. Proc Natl Acad Sci USA 106: 21760–21765.
Yu Y, Tang T, Qian Q, Wang Y, Yan M, Zeng D, Han B, Wu Chung-I, Shi S and Li J (2008) Independent losses of function in a polyphenol oxidase in rice: differentiation in grain discoloration between subspecies and the role of positive selection under domestication. Plant Cell 20: 2946-2959.
Li P, Wang Y, Qian Q, Fu Z, Wang M, Zeng D, Li B, Wang X, and Li J ( (2007) LAZY1 controls rice shoot gravitropism through regulating polar auxin transport. Cell Res 17: 402-410.
Dai Y, Wang H, Li B, Huang J, Liu X, Zhou Y, Mou Z and Li J (2006) Increased expression of MAPKK7 causes deficiency in polar auxin transport and leads to plant architectural abnormality in Arabidopsis. Plant Cell 18: 308-320.
Xiong G, Hu X, Jiao Y, Yu Y, Chu C, Li J, Qian Q and Wang Y (2006) LEAFY HEAD2, which encodes a putative RNA-binding protein, regulates shoot development of rice. Cell Res 16: 267-276.
Ge C, Cui X, Wang Y, Hu Y, Fu Z, Zhang D, Cheng Z, and Li J (2006) BUD2, encoding an S-adenosylmethionine decarboxylase, is required for Arabidopsis growth and development. Cell Res 16: 446-456.
Hu Y, Wang Y, Liu X, and Li J (2004) Arabidopsis RAV1 is down-regulated by brassinosteroid and may act as a negative regulator during plant development. Cell Res 14: 8-15.
Li Y, Qian Q, Zhou Y, Yan M, Sun L, Zhang M, Fu Z, Wang Y, Han B, Pang X, Chen M and Li J (2003) BRITTLE CULM 1, which encodes a COBRA-like protein, affects the mechanical properties of rice plants. Plant Cell 15: 2020-2031.
Li X, Qian Q, Fu Z, Wang Y, Xiong G, Zeng D, Wang X, Liu X, Teng S, Hiroshi F, Yuan M, Luo D, Han B and Li J (2003) Control of tillering in rice. Nature 422: 618-621.
Feng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y, Hu X, Jia P, Zhang Y, Zhao Q, Ying K, Yu S, Tang Y, Weng Q, Zhang L, Lu Y, Mu J, Lu Y, Zhang LS, Yu Z, Fan D, Liu X, Lu T, Li C, Wu Y, Sun T, Lei H, Li T, Hu H, Guan J, Wu M, Zhang R, Zhou B, Chen Z, Chen L, Jin Z, Wang R, Yin H, Cai Z, Ren S, Lv G, Gu W, Zhu G, Tu Y, Jia J, Zhang Y, Chen J, Kang H, Chen X, Shao C, Sun Y, Hu Q, Zhang X, Zhang W, Wang L, Ding C, Sheng H, Gu J, Chen S, Ni L, Zhu F, Chen W, Lan L, Lai Y, Cheng Z, Gu M, Jiang J, Li J, Hong G, Xue Y and Han B (2002) Sequence and analysis of rice chromosome 4. Nature 420: 316-320.
Mou Z, Wang X, Fu Z, Dai Y, Han C, Ouyang J, Bao F, Hu Y, and Li J (2002) Silencing of phosphoethanolamine N-methyltransferase results in temperature-sensitive male sterility and salt hypersensitivity in Arabidopsis. Plant Cell 14: 2031-2043.
Hu Y, Bao F and Li J (2000) The promotive effect of brassinosteroids on cell division involves a distinct cycD3-induction pathway in Arabidopsis. Plant J 24: 693-701.
Ouyang J, Shao X and Li J (2000) Indole-3-glycerol phosphate, a branchpoint of indole-3-acetic acid biosynthesis from tryptophan biosynthetic pathway in Arabidopsis thaliana. Plant J 24: 327-333.
Mou Z, He Y, Dai Y, Liu X and Li J (2000) Deficiency in fatty acid synthase leads to premature cell death and dramatic alterations in plant morphology. Plant Cell 12: 405-417.
Li J and Last RL (1996) The Arabidopsis thaliana trp5 mutant has a feedback-resistant anthranilate synthase and elevated soluble tryptophan. Plant Physiol 110: 51-59.
Li J, Zhao J, Rose AB, Schmidt R and Last RL (1995) Arabidopsis phosphoribosyl anthranilate isomerase: molecular genetic analysis of triplicate tryptophan pathway genes. Plant Cell 7: 447-461.
Li J, Ou-Lee T, Raba R, Amundson RG and Last RL (1993) Arabidopsis flavonoid mutants are hypersensitive to UVB irradiation. Plant Cell 5: 171-179.
B. Selected Invited Articles
Li B, Sun C, Li J, Gao C. (2024) Targeted genome-modification tools and their advanced applications in crop breeding. Nat Rev Genet. 25:603-622.
Zhang J, Yu H, Li J. (2023). De novo domestication: retrace the history of agriculture to design future crops. Curr Opin Biotechnol 81:102946.
Yu H, Kou L, Li J. (2023). 10k-level integrated rice database shows power for exploiting rare variants. J Integr Plant Biol. 65:2539-2540.
Yu H, and Li J. Producing hybrid seeds like conventional rice. (2022). Cell Res. 32, 959-960.
Yu H, Shao N, and Li J. (2022). An unprecedented one-arrow-two-hawks strategy achieves high yield with early flowering in rice. Mol Plant. 2022 15: 1412-1414.
Yu H, and Li J. (2022). Breeding future crops to feed the world through de novo domestication. Nat Commun. 2022 13: 1171.
Chen R, Deng Y, Ding Y, Guo J, Qiu J, Wang B, Wang C, Xie Y, Zhang Z, Chen J, Chen L, Chu C, He G, He Z, Huang X, Xing Y, Yang S, Xie D, Liu Y, and Li J. (2022). Rice functional genomics: decades’ efforts and roads ahead. Sci China Life Sci. 65: 33-92.
Huang X, Huang S, Han B, and Li J. (2022). The integrated genomics of crop domestication and breeding. Cell. 185: 2828-2839.
Shen L, Li J, and Li Y. (2022). Resistant starch formation in rice: Genetic regulation and beyond. Plant Commun. 3: 100329.
Zhou S, Ma Y, Shang Y, Qi X, Huang S, and Li J. (2022). Functional diversity and metabolic engineering of plant specialized metabolites. Life Metab. loac019.
Yu H, and Li J. (2021). Short and Long Term Challenges in Crop Breeding. Natl Sci Rev 2021, 8: nwab002.
Wang B, and Li J. (2021). Rice geographic adaption to poor soil: novel insights for sustainable agriculture. Mol Plant 14: 369-371.
Zhang J, Zeng P, Yu H, Meng X, and Li J. (2021). De novo domestication of polyploid rice: a novel breeding strategy and future prospects. Sci Sin Vitae 51: 1467-1476.
Chong K, and Li J. (2021). The development of plant science has brought about a new revolution in breeding technology. Sci Sin Vitae 51: 1353-1355.
Jing H, Tian Z, Chong K., and Li J. (2021). Progress and perspective of molecular design breeding. Sci Sin Vitae 51: 1356-1365.
Cao X, Sun B, Chen H, Zhou J.M., Song X, Liu X, Deng X, Li X, Zhao Y, Zhang J, and Li J. (2021). Approaches and research progresses of marginal land productivity expansion and ecological benefit improvement in China. Bulletin of the Chinese Academy of Sciences 36: 336-348.
Tian Z, Wang J W, Li J, and Han B. (2020). Designing future crops: challenges and strategies for sustainable agriculture. Plant J.105:1165-1178.
Zhao Y, Yu H, Zhou J M, Smith S M, and Li J. (2020). Malate circulation: linking chloroplast metabolism to mitochondrial ROS. Trends Plant Sci 25, 446-454.
Wang B and Li J (2019) Understanding the molecular bases of agronomic trait improvement in rice. Plant Cell. 31: 1416-1417.
Bai S, Yu H, Wang B, and Li J (2018). Retrospective and perspective of rice breeding in China. J Genet Genomics 45: 603-612.
Wang B, Smith SM and Li J (2018) Genetic Regulation of Shoot Architecture. Annu Rev Plant Biol 69: 437-468.
Li J (2016) Rice breeding: never off the table. Natl Sci Rev 3, 275.
Qian Q, Guo L, Smith SM, and Li J. (2016) Breeding high-yield superior-quality hybrid super-rice by rational design. Natl Sci Rev 3, 283-294.
Xiong G, Li J, and Smith SM. (2016) Evolution of strigolactone perception by seeds of parasitic plants – reinventing the wheel. Mol Plant 9, 493-495.
Smith S, and Li J (2014). Signalling and responses to strigolactones and karrikins. Curr Opin Plant Biol 21C, 23-29.
Zuo J, and Li J (2014). Molecular genetic dissection of quantitative trait loci regulating rice grain size. Annu Rev Genet 48, 99-118.
Zuo J and Li J (2013) Molecular Dissection of Complex Agronomic Traits of Rice: A Team Effort by Chinese Scientists in Recent Years. National Sci Rev doi:10.1093/nsr/nwt004.
Li J and Chua N-H (2011) A comprehensive understanding of plant growth and development. Curr Opin Plant Biol 14: 1-3.
Wang Y and Li J (2011) Branching in rice. Curr Opin Plant Biol 14: 94-99.
Wang Y and Li J (2008). Rice, rising. Nat Genet 40, 1273-1275.
Wang Y and Li J (2008). Molecular basis of plant architecture. Annu Rev Plant Biol 59: 253-279.
Han B, Xue Y, Li J, Deng X, and Zhang Q (2007) Rice functional genomics research in China. Phil Trans R Soc B 362: 1009–102.
Wang Y and Li J (2006) Genes controlling plant architecture. Curr Opin Biotech 17: 123-129.
Wang Y, Xue Y and Li J (2005) Towards molecular breeding and improvement of rice in China. Trends Plant Sci 10: 610-614.
C. Selected Invited Book Chapters
Li J, Meng X,
Li J, and Gao C (2019). Gene replacement by intron targeting with CRISPR-Cas9.
Methods Mol Biol1917, pp. 285-296.
Bai S, Smith SM, and Li J (2018). Rice Plant Architecture: Molecular Basis and Application in Breeding. In: Rice Genomics, Genetics and Breeding (Sasaki T, Ashikari M), Springer Singapore, pp. 129-154.
Li J, Li C, and Smith SM, eds (2017). Hormone Metabolism and Signaling in Plants. London, United Kingdom: ELSEVIER Academic Press. ISBN 978-0-12-811562-6.
Smith SM, Li C, Li J (2017). Hormone function in plants. In: Hormone Metabolism and Signaling in Plants (Li J, Li C, Smith SM), Academic Press Elsevier (London UK), pp, 1-38.
Wang B, Wang Y, Li J (2017). Strigolactones. In: Hormone Metabolism and Signaling in Plants (Li J, Li C, Smith SM) Academic Press Elsevier (London UK), pp. 327-359.
Jiang Z, Li J, Qu L (2017). Auxins. In: Hormone Metabolism and Signaling in Plants (Li J, Li C, Smith SM) Academic Press Elsevier (London UK), pp. 39-76.
Xiong G, Wang Y, Li J (2014) Action of strigolactones in plant. In The Enzymes. Vol 35 Signaling Pathways in Plants. (Machida Y, Lin C, Tamanoi F, Eds), Elsevier, pp. 57-84.
Sang T and Li J (2013) Molecular genetic basis of the domestication syndrome in cereals. In Cereal Genomics-II (Gupta PK, Varshney RK, eds), Springer Science pp. 319-340.
Yu Y, Wing RA and Li J (2013) Understanding genetic molecular basis of rice grain quality. In Genetics and Genomics of Rice(Zhang Q and Wing RA, eds), Springer New York Heidelberg Dordrecht London, pp. 237-254.
Wang Y and Li J (2012) Regulation of plant architecture. In Plant Physiology and Molecular Biology (Chen X, Xue H, eds), Higher Education Press, Beijing, pp. 418-432.
Wang Y, Chen M and Li J (2007) Rice. In Biotechnology in Agriculture and Forestry Vol. 59 Transgenic Crops IV (E.C. Pua and M.R.Davey, eds), Springer-Verlag Berlin Heidelberg, pp. 35-54.
审定品种
A. 国家审定品种
中科发2016，国审稻20233266，国家农作物品种审定委员会
嘉优中科 20-10，国审稻20233262，国家农作物品种审定委员会
嘉禾优7号，国审稻20220135，国家农作物品种审定委员会
荃9优220，国审稻20226019，国家农作物品种审定委员会
嘉禾优5号，国审稻20210396，国家农作物品种审定委员会
中科发7号，国审稻20200307，国家农作物品种审定委员会
中科发8号，国审稻20200061，国家农作物品种审定委员会
中科发176，国审稻20200051，国家农作物品种审定委员会
荃9优220，国审稻20206096，国家农作物品种审定委员会
嘉禾优7号，国审稻20200280，国家农作物品种审定委员会
中龙粳107，国审稻20200303，国家农作物品种审定委员会
千乡优220，国审稻20196116，国家农作物品种审定委员会
荃优220，国审稻20196117，国家农作物品种审定委员会
嘉禾优5号，国审稻20190151，国家农作物品种审定委员会
中科发5号，国审稻20180077，国家农作物品种审定委员会
中科发6号，国审稻20180071，国家农作物品种审定委员会
嘉优中科6号，国审稻20170063，国家农作物品种审定委员会
中科804，国审稻20170080，国家农作物品种审定委员会
嘉禾优7245，国审稻20170064，国家农作物品种审定委员会
广两优7217，国审稻2016039，国家农作物品种审定委员会
广两优7203，国审稻2014032，国家农作物品种审定委员会
天优华占，国审稻2012001，国家农作物品种审定委员会
天优华占，国审稻2011008，国家农作物品种审定委员会
天优华占，国审稻2008020，国家农作物品种审定委员会
B. 省市审定品种
嘉优中科6号，苏审稻20230086，江苏省品种审定委员会
中科804，黑审稻20220003，黑龙江省品种审定委员会
嘉优中科13-1，浙审稻2022-1-0054，浙江农作物品种审定委员会
嘉禾优7245，桂审稻2022093，广西省品种审定委员会
嘉87，沪审稻2021005，上海市农作物品种审定委员会
嘉禾优7245，桂审稻2020220，广西省品种审定委员会
中科发928，冀审稻2019003，河北省品种审定委员会
中龙粳100，黑审稻20190001，黑龙江省品种审定委员会
嘉优中科10号，赣审稻20180019，江西农作物品种审定委员会
嘉优中科13-1，浙审稻2018016，浙江农作物品种审定委员会
安粳优1号，浙审稻2018021，浙江农作物品种审定委员会
嘉优中科1号，沪审稻2016004，上海农作物品种审定委员会
嘉优中科2号，赣审稻2016012，江西农作物品种审定委员会
嘉优中科3号，浙审稻2016014，浙江农作物品种审定委员会
广两优7217，赣审稻2015043，江西农作物品种审定委员会
中龙粳1号，黑审稻2013010，黑龙江农作物品种审定委员会
广两优7203，浙审稻2013012，浙江农作物品种审定委员会
嘉58，浙审稻2013011，浙江农作物品种审定委员会
嘉优6号，浙审稻2012015，浙江农作物品种审定委员会
中龙香粳1号，黑审稻2012015，黑龙江农作物品种审定委员会
天优华占，鄂审稻2011006，湖北农作物品种审定委员会
天优华占，粤审稻2011036，广州农作物品种审定委员会
浙辐两优12，浙审稻2009012，浙江农作物品种审定委员会
授权专利
A. 国际专利
Philippines 1-2012501831, Protein IPA1 related to plant architecture, its coding genes and uses. J. Li, Q. Qian, Y. Wang, Y. Jiao,D. Xue, G. Liu, J. Wang, G. Dong.
US 9,309,527 B2, Protein IPA1 related to plant architecture, its coding genes and uses. J. Li, Q. Qian, Y. Wang, Y. Jiao,D. Xue, G. Liu, J. Wang, G. Dong.
B. 国内专利
ZL202210697914.2一种体外重组水稻SCF(D3)E3连接酶的方法及其应用 发明人：李家洋，王冰，刘会会，余泓，孟祥兵，刘贵富，陈明江，荆彦辉
ZL202210696862.7 一种使用融合蛋白体外重组多亚基SCF E3连接酶的方法及应用发明人：李家洋，王冰，刘会会，余泓，孟祥兵，刘贵富，陈明江，荆彦辉
ZL202110046860.9 一种调控植物基因组DNA特定区域甲基化水平的方法发明人：李家洋，宋晓光，余泓，孟祥兵
ZL202110141716.3通过抑制SD1基因的表达降低四倍体野生稻株高的方法发明人：李家洋，余泓，孟祥兵，张静昆，刘贵富，荆彦辉，陈明江
ZL202110190722.8一种缩短水稻生育期的方法、蛋白质、核酸分子、生物材料及其应用发明人：李家洋，孟祥兵，余泓，张静昆，刘贵富，荆彦辉，陈明江
ZL202110190721.3 OaAn-1蛋白、编码基因及其相关生物材料的应用发明人：李家洋，余泓，孟祥兵，张静昆，刘贵富，荆彦辉，陈明江
ZL202110135834.3 一种以成熟胚作为外植体的野生稻遗传转化的方法及其使用的培养基 发明人：李家洋，孟祥兵，余泓，张静昆，刘贵富，荆彦辉，陈明江
ZL202110141891.2 抑制OaGS3基因表达的物质在调控四倍体野生稻籽粒长度中的应用发明人：李家洋，余泓，孟祥兵，张静昆，刘贵富，荆彦辉，陈明江
ZL201911093561.X 一种对植物特定基因进行饱和碱基编辑的育种方法 发明人：余泓，宋晓光，李家洋， 孟祥兵
ZL 201910720272.1 热裂解气相色谱质谱联用对橡胶草中天然橡胶的检测方法 发明人：王海敬，范秀丽，徐霞，崔霞，李家洋
ZL201010146613.8 与植物株型相关的蛋白IPA1及其编码基因与应用 发明人：李家洋，钱前，王永红，矫永庆，薛大伟，刘贵富，王静，董国军
ZL201010231207.1 水稻稻米胶稠度调控基因分子标记及其应用发明人：李家洋，顾铭洪，钱前，田志喜，刘巧泉，严长杰，刘贵富，王永红
ZL201010231209.0 水稻稻米直链淀粉含量调控基因分子标记及其应用发明人：李家洋，顾铭洪，钱前，田志喜，刘巧泉，严长杰，刘贵富，王永红
ZL201010231187.8 水稻稻米糊化温度调控基因分子标记及其应用发明人：李家洋，顾铭洪，钱前，田志喜，刘巧泉，严长杰，刘贵富，王永红
ZL200910083935.X 一种水稻分蘖相关蛋白及其编码基因与应用发明人：李家洋，钱前，王永红，林浩，王仁晓，孟祥兵
ZL200910077629.5水稻茎秆机械强度控制基因BC10及其应用 发明人：李家洋，周奕华，钱前
ZL200510088978.9水稻胚乳直链淀粉含量控制基因DU1及其应用 发明人：李家洋，钱前，曾大力，田志喜，周奕华
ZL200510006770.8, 水稻胚乳甜质控制基因SU1及其应用 发明人：李家洋，钱前，曾大力，周奕华
ZL200410096425.3 水稻籼粳分类控制基因PHR1及其应用 发明人：李家洋，钱前，于彦春，曾大力，周奕华
ZL03132810.5 水稻稻米糊化温度主效控制基因ALK及其应用 发明人：李家洋，钱前，高振宇，周奕华
ZL02144344.0 拟南芥BUD1基因及其应用 发明人：李家洋，戴亚，王晓群，周奕华
ZL02129196.9 水稻分蘖控制基因MOC1及其应用 发明人：李家洋，钱前，李学勇，曾大力，付志明，王永红，熊国胜，王晓群，刘新仿
ZL02131417.9 水稻脆秆控制基因BC1及其应用 发明人：李家洋，钱前，李云海，曾大力，藤胜
