已发表的部分论文: # 同等贡献,* 通讯作者
1. Luo Q, Zheng Q*, …, He F, Zheng L. The location and genome origin of alien chromatin in wheat founder parent Xiaoyan 6. Theoretical and Applied Genetics 2025
2. Ma S, Liu J, …, He F*, Ling HQ*. A comprehensive map of DNA-segment copy number variation in 491 genomes of common wheat uncovers genes associated with multiple agronomic traits. Plant Communications 2024
3. Liu J, Ma S, …, He F*, Zhao S*, Ling HQ*. Whole-genome sequencing of diverse wheat accessions uncovers genetic changes during modern breeding in China and the United States. Plant Cell 2023
4. Wang D, …, He F*, Liu X*, Xiao J*. Boosting wheat functional genomics via an indexed EMS mutant library of KN9204. Plant Communications 2023
5. He F#, Wang W#,…, Akhunov E. Genomic variants affecting homoeologous gene expression dosage contribute to agronomic trait variation in allopolyploid wheat. Nature Communications 2022, 13, 826
6. Jordan K#, He F#, Fernandez M, Akhunova A, Akhunov E. Differential chromatin accessibility landscape reveals the structural and functional features of the allopolyploid wheat chromosomes. Genome Biology 2020, 21:176
7. Xiao L, Zhao Z, He F*, Du Z*. Multivariable regulation of gene expression plasticity in metazoans. Open Biology 2019, 9(12):190150.
8. He F, Pasam R, Shi F, …, Hayden M, Akhunov E. Exome sequencing highlights the role of wild relative introgression in shaping the adaptive landscape of the wheat genome. Nature Genetics 2019, 51, 896–904
9. Qi H, Jiang Z, Zhang K, Yang S, He F*, Zhang Z*. PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System. Genomics, Proteomics Bioinformatics 2018, 16(4):283-293
10. Arkin AP, et al. KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature Biotechnology 2018, 36:566–569.
11. He F, Yoo S, Wang D, Kumari S, Gerstein M, Ware D, Maslov S. Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis. Plant Journal 2016, 86:472–480.
12. He F*, Karve AA, Maslov S, Babst BA. Large-Scale Public Transcriptomic Data Mining Reveals a Tight Connection between the Transport of Nitrogen and Other Transport Processes in Arabidopsis. Frontiers in Plant Science 2016, 11;7:1207.
13. He F*, Maslov S*. Pan-and core-network analysis of co-expression genes in a model plant. Scientific Reports 2016, 6:38956.
14. He F#, Zhou Y#, Zhang Z. Deciphering the Arabidopsis floral transition process by integrating a protein-protein interaction network and gene expression data. Plant Physiology 2010, 153(4):1492-505
15. He F, Zhang Y, Chen H, Zhang Z, Peng Y-L. The prediction of protein-protein interaction networks in rice blast fungus. BMC Genomics 2008, 9:519