代表论著（*为通讯作者）：
2025
136. Xiangjie Zhao and Xiu-Jie Wang*. (2025) A systematic analysis of human hormone receptors. Science China.Life Science 68 (11): 3353-3366.
135. Jiayi Lin, Xin Liu, Qinhan Li, Fei Ge, Jinghua Ma, Xianlong Ng, Qi Pan, Xiangxiang Wei, Qingjun Jiang, Jiayu Jin, Siyu Ma, Yunquan He, Yongbo Li, Nan Jiang, Yannan Hou, Yueyang Yu, Xiaoke Lin, Quanshan Jin, Chengguo Xu, Xinhong Wang, Xiuling Zhi, Qianqian Liang, Lindi Jiang, Elena Osto, Jieyu Guo*, Xiu-Jie Wang* and Dan Meng*. (2025) A BACH1 inhibitor ameliorates myocardial infarction and limb ischemia in mice. Molecular Therapy 33(10): 5192-5211.
134. Hanxiao Sun, Bo Lu, Zeyu Zhang, Ye Xiao, Zhe Zhou, Lin Xi, Zhichao Li, Zhe Jiang, Jiayi Zhang, Meng Wang, Cong Liu, Yichen Ma, Jinying Peng, Xiu-Jie Wang* and Chengqi Yi*. (2025) Mild and ultrafast GLORI enables absolute quantification of m6A methylome from low-input samples. Nature Methods 22 (6): 1226–1236.
133. Min Zhu, Kun Hua, Huiqing Wang, Zhiyuan Guan, Zexin Tong, Juan Gao, Quanyou Shi, Hu Wang, Shen Yan, Yuhua Liu, Qingqing Shi, Tan Xu, Jiaxing Wang, Tianqi Chang, Yuzhou Xue, Yaobo Zhao, Yiwen Fu, Huiping Zheng, Xinheng Feng, Shaomei Shang, Xiu-Jie Wang, Shi-Qiang Wang, Zhe Zhang, Feng Lan, Changtao Jiang, Xiubin Yang*, Lemin Zheng* and Ming Xu*. (2025) Glycoursodeoxycholic acid 3 sulfate sodium links hemodynamics and bile acid metabolism in aortic stenosis. Journal of Advanced Research Doi. 10.1016/j.jare.2025.09.011.
132. Ying Zhang, Zeyu Zhang, Hong-Xuan Chen, Chao Liu, Biao-Di Liu, Ye-Lin Lan, Ying-Yuan Xie, Tao Chen, Shaobo Chen, Guihai Feng, Zhang Zhan, Wei Li, Nan Cao, Xiu-Jie Wang and Guanzheng Luo*. (2025) Sequence and parent-of-origin dependent m6A contribute to allele-specific gene expression. The EMBO Journal 44(14): 4120-4149.
2024
131. Qingqing Shi, Min Dai, Yingke Ma, Jun Liu, Xiuying Liu and Xiu-Jie Wang*. (2024) DRED: a comprehensive database of genes related to repeat expansion diseases. Genomics Proteomics & Bioinformatics 22(5): qzae068.
130. Lei Shi, Meng Wang and Xiu-Jie Wang*. (2024) Application of artificial intelligence in life science: historical review and future perspectives. Fundamental Research Doi.org/ /j.fmre.2024.10.014.
129. Zhan Hu, Min Dai, Yuan Chang, Xiumeng Hua, Ningning Zhang, Xiao Chen, Yixuan Sheng, Zhenyu Xu, Hang Zhang, Yu Zhang, Hao Cui, Hao Jia, Xiu-Jie Wang* and Jiangping Song*. (2024) Strategies for arterial graft optimization at the single-cell level. Nature Cardiovascular Research 3: 541–557.
128. Mingyu Liao, Xing Li, Hao Zhang, Ling Zhou, Liu Shi, Weixin Li, Rufei Shen, Guiliang Peng, Huan Zhao, Jiaqing Shao, Xiu-Jie Wang, Zheng Sun, Hongting Zheng* and Min Long*. (2024) Effects and plasma proteomic analysis of GLP-1RA versus CPA/EE, in combination with metformin, on overweight PCOS women: a randomized controlled trial. Endocrine 83(1): 227-241.
2023
127. Meng Wang, Dongfang Xie, Meng Zhang and Xiu-Jie Wang*. (2023) Multiple ingredients of a Chinese medicine formula Sheng-Mai-San coordinately attenuate doxorubicin-induced cardiotoxicity. Pharmacological Research-Modern Chinese Medicine 8: 100281.
126. Zeyu Zhang and Xiu-Jie Wang*. (2023) N6-methyladenosine mRNA modification: from modification site selectivity to neurological functions. Accounts of Chemical Research 56(21): 2992-2999.
125. Xing Luo, Min Dai, Min Wang, Xiu-Jie Wang and Weixiang Guo*. (2023) Functional heterogeneity of Wnt-responsive and hedgehog-responsive neural stem cells in the murine adult hippocampus. Developmental Cell 58(22): 2545-2562.
124. Xin Qiu, Yongbo Zhang, Hongqiu Gu, Yingyu Jiang, Yuesong Pan, Yong Jiang, Xia Meng, Yilong Wang, Xingquan Zhao, Hao Li, Xiu-Jie Wang, Yongjun Wang* and Zixiao Li*. (2023) Association between CYP2B6 polymorphisms and efficacy of clopidogrel in minor stroke or transient ischemic attack. Stroke 54(7): 1770-1776.
123. Siyuan Zhang, Jinhong Kan, Xin Liu, Yao Wu, Mingyang Zhang, Jinqing Ou, Juan Wang, Lin An, Defeng Li, Li Wang, Xiu-Jie Wang, Rongxiang Fang and Yantao Jia*. (2023) Phytopathogenic bacteria utilize host glucose as a signal to stimulate virulence through LuxR homologues. Molecular Plant Pathology 24(4): 359-373.
122. Cengfan Wei, Meng Wang and Xiu-Jie Wang*. (2023) Evolutionary conservation analysis of human arachidonic acid metabolism pathway genes. Life Medicine 2(2): lnad004.
2022
121. Zeyu Zhang, Chenming Wu, Chengkai Dai, Qingqing Shi, Guoxin Fang, Dongfang Xie, Xiangjie Zhao, Yongjin Liu*, Charlie C.L. Wang* and Xiu-Jie Wang*. (2022) A multi-axis robot-based bioprinting system supporting natural cell function preservation and cardiac tissue fabrication. Bioactive Materials 18: 138-150.
120. Min Dai, Xiaobing Pei* and Xiu-Jie Wang*. (2022) Accurate and fast cell marker gene identification with COSG. Briefings in Bioinformatics 23(2): bbab579.
119. Linshuang Zhang, Jinsheng Zhang, Yuelong Hou, Weiwei Lu, Xianqiang Ni, Fan Lin, Xiuying Liu, Xiu-Jie Wang, Yanrong Yu, Mozhi Jia, Chaoshu Tang, Ling Han*, Sanbao Chai* and Yongfen Qi*. (2022) Intermedin1-53 inhibits NLRP3 inflammasome activation by targeting IRE1α in cardiac fibrosis. Inflammation 45(4): 1568-1584.
118. Haifeng Wan, Rui Fu, Man Tong, Yukai Wang, Libin Wang, Siqi Wang, Ying Zhang, Wei Li, Xiu-Jie Wang and Guihai Feng*. (2022) Influence of feeder cells on transcriptomic analysis of pluripotent stem cells. Cell Proliferation 55(2): e13189.
2021
117. Yanliang Wang, Meng Wang and Xiu-Jie Wang*. (2021) Identification of dysregulated microRNAs involved in arachidonic acid metabolism regulation in dilated cardiomyopathy-mediated heart failure patients. Acta Physiologica Sinica 73(4): 584-596.
116. Min Zhu, Juan Gao, Xianjuan Lin, Yunyun Gong, Yanchao Qi, Yuanliang Ma, Yuanxiu Song, Wei Tan, Fangyuan Li, Min Ye, Jun Gong, Qinghua Cui, Zenghui Huang, Youyi Zhang, Xiu-Jie Wang, Feng Lan, Shiqiang Wang, Gu Yuan, Yue Feng and Ming Xu*. (2021) Novel roles of an intragenic G-quadruplex in controlling microRNA expression and cardiac function. Nucleic Acids Research 49: 2522-2536.
115. Zhimin Shi, Zeyu Zhang, Lana Schaffer, Zhi Huang, Lijuan Fu, Steven Head, Terry Gaasterland, Xiu-Jie Wang and XiaoChing Li*. (2021) Dynamic transcriptome landscape in the song nucleus HVC between juvenile and adult zebra finches. Advanced Genetics 2(1): e10035.
114. Dongfang Xie, Man Tong, Baolong Xia, Guihai Feng, Leyun Wang, Ang Li, Guanzheng Luo, Haifeng Wan, Zeyu Zhang, Hao Zhang, Yungui Yang, Qi Zhou, Meng Wang* and Xiu-Jie Wang*. (2021) Long noncoding RNA lnc-NAP sponges mmu-miR-139-5p to modulate Nanog functions in mouse ESCs and embryos. RNA Biology 18(6): 875-887.
113. Huizhen Lv, Hui Wang, Meixi Quan, Chenghu Zhang, Yi Fu, Lu Zhang, Changdong Lin, Xin Liu, Xianfu Yi, Jianfeng Chen, Xiu-Jie Wang, Tao Cheng, Ding Ai, Wei Kong* and Yi Zhu*. (2021) Cartilage oligomeric matrix protein fine-tunes disturbed flow-induced endothelial activation and atherogenesis. Matrix Biology 95: 32-51.
112. Lei Shi, Hua Qu, Hongting Zheng* and Xiu-Jie Wang*. (2021) Developmental trend analysis and perspectives on researches related to hepatic glucose and lipid metabolism. Acta Physiologica Sinica 73(5): 781-794.
2020
111. Xin Liu and Xiu-Jie Wang*. (2020) Potential inhibitors against 2019-nCoV coronavirus M protease from clinically approved medicines. Journal of Genetics and Genomics 47: 119-121.
110. Le Cui, Yingyang Xu, Xiu-Jie Wang and Kai Guan*. (2020) Stinging insect allergens. Current Protein & Peptide Science 21: 142-152.
109. Lisha Li, Hao Zhang, Meng Wang, Xiu-Jie Wang and Kai Guan*. (2020) Early transcriptomic profiling variation caused by cluster allergen immunotherapy. Chinese Medical Journal (Engl) 133: 1366-1368.
2019
108. Haiyu Xu, Yanqiong Zhang, Zhenming Liu, Tong Chen, Chuanyu Lv, Shihuan Tang, Xiaobo Zhang, Wei Zhang, Zhiyong Li, Rongrong Zhou, Hongjun Yang*, Xiu-Jie Wang* and Luqi Huang*. (2019) ETCM: an encyclopaedia of traditional Chinese medicine. Nucleic Acids Research 47(D1): D976-D982.
107. Hang Wang, Shuyu Li, Yanan Li, Yiran Xu, Yunhao Wang, Ruoxi Zhang, Wenjing Sun, Qian Chen, Xiu-Jie Wang, Chuanyou Li* and Jiuhai Zhao*. (2019) MED25 connects enhancer-promoter looping and MYC2-dependent activation of jasmonate signalling. Nature Plants 5(6): 616-625.
106. Xiaoxi Pan, Chengchao Ruan*, Xiuying Liu, Lingran Kong, Yu Ma, Qihong Wu, Haiqing Li, Yanjun Sun, Anqing Chen, Qiang Zhao, Fang Wu, Xiu-Jie Wang, Jiguang Wang, Dingliang Zhu and Pingjin Gao. (2019) Perivascular adipose tissue-derived stromal cells contribute to vascular remodeling during aging. Aging Cell 18(4): e12969.
105. Yang Weng, Rui Zeng, Chenming Wu, Meng Wang, Xiu-Jie Wang* and Yongjin Liu*. (2019) A survey on deep-learning-based plant phenotype research in agriculture. Scientia sinica vitae 49(6): 698-716.
104. Jinjing Zhang, Lipeng Wang, Rongchang Li, Meng Wang, Zenghui Huang, Min Zhu, Jiaxing Wang, Xiu-Jie Wang, Shiqiang Wang* and Ming Xu*. (2019) Abnormal expression of miR-331 leads to impaired heart function. Science Bulletin 64(14): 1011-1017.
2018
103. Xianqiang Ni, Weiwei Lu, Jinsheng Zhang, Qing Zhu, Jinling Ren, Yanrong Yu, Xiuying Liu, Xiu-Jie Wang, Mei Han, Qing Jing, Jie Du, Chaoshu Tang and Yongfen Qi*. (2018) Inhibition of endoplasmic reticulum stress by intermedin1-53 attenuates angiotensin II-induced abdominal aortic aneurysm in ApoE KO Mice. Endocrine 62: 90-106.
102. Chenxin Wang, Guanshen Cui, Xiuying Liu, Kai Xu, Meng Wang, Xinxin Zhang, Liyuan Jiang, Ang Li, Ying Yang, Weiyi Lai, Baofa Sun, Guibin Jiang, Hailin Wang, Weimin Tong, Wei Li, Xiu-Jie Wang*, Yungui Yang* and Qi Zhou*. (2018) METTL3-mediated m6A modification is required for cerebellar development. PLoS Biology 16: e2004880.
101. Jinlong He, Qiankun Bao, Yan Zhang, Mingming Liu, Huizhen Lv, Yajin Liu, Liu Yao, Bochuan Li, Chenghu Zhang, Shuang He, Guijin Zhai, Yan Zhu, Xin Liu, Kai Zhang, Xiu-Jie Wang, Minghui Zou, Yi Zhu and Ding Ai*. (2018) Yes-associated protein promotes angiogenesis via signal transducer and activator of transcription 3 in endothelial cells. Circulation Research 122: 591-605.
100. Zeyu Zhang, Meng Wang, Dongfang Xie, Zenghui Huang, Lisha Zhang, Ying Yang, Dongxue Ma, Wenguang Li, Qi Zhou, Yungui Yang* and Xiu-Jie Wang*. (2018) METTL3-mediated N6-methyladenosine mRNA modification enhances long-term memory consolidation. Cell Research 28: 1050-1061.
(Cover Story. Commented byhttps://doi.org/10.1038/s41422-018-0121-8 )
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N6-methyladenosine (m6A) mRNA modification enhances learning efficacy, and overdosed training can compensate for the effect of m6A insufficiency. Cover image shows two tortoises with different levels of m6A modifications (shown as the numbers of hexagons on their shells) are competing in a race, which is an analogy to learning process. The tortoise with more m6A races more easily with less steps. However, if the one with less m6A pays more effort, the initial disadvantage can be overcome, and the two tortoises can finish the match at the same time. |
2017
99. Meng Wang, Huajun Wu, Jun Fang, Chengcai Chu and Xiu-Jie Wang*. (2017) A long noncoding RNA involved in rice reproductive development by negatively regulating osa-miR160. Science Bulletin 62: 470-475.
98. Mengzhu Chen, Xiuying Liu, Jie Du, Xiu-Jie Wang* and Lixin Xia*. (2017) Differentiated regulation of immune-response related genes between LUAD and LUSC subtypes of lung cancers. Oncotarget 8: 133-144.
97. Zeyu Zhang and Xiu-Jie Wang*. (2017) Current progresses of 3D bioprinting based tissue engineering. Quantitative Biology 5: 136-142.
96. Benjamin Deonovic, Yunhao Wang, Jason Weirather, Xiu-Jie Wang and Kin Fai Au*. (2017) IDP-ASE: haplotyping and quantifying allele-specific expression at the gene and gene isoform level by hybrid sequencing. Nucleic Acids Research 45: e32.
95. Jason L Weirather, Mariateresa de Cesare, Yunhao Wang, Paolo Piazza, Vittorio Sebastiano, Xiu-Jie Wang, David Buck* and Kin Fai Au*. (2017) Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis. F1000Research 6: 100.
94. Kai Xu, Ying Yang, Guihai Feng, Baofa Sun, Junqing Chen, Yufei Li, Yusheng Chen, Xinxin Zhang, Chenxin Wang, Liyuan Jiang, Chao Liu, Zeyu Zhang, Xiu-Jie Wang, Qi Zhou, Yungui Yang* and Wei Li*. (2017) Mettl3-mediated m6A regulates spermatogonial differentiation and meiosis initiation. Cell Research 27: 1100-1114.
93. Yingying Han, Xiao Chu, Haopeng Yu, Yingke Ma, Xiu-Jie Wang, Wenfeng Qian* and Yuling Jiao*. (2017) Single-cell transcriptome analysis reveals widespread monoallelic gene expression in individual rice mesophyll cells. Science Bulletin 62(19): 1304-1314.
2016
92. Guihai Feng, Man Tong, Baolong Xia, Guanzheng Luo, Meng Wang, Dongfang Xie, Haifeng Wan, Ying Zhang, Qi Zhou* and Xiu-Jie Wang*. (2016) Ubiquitously expressed genes participate in cell-specific functions via alternative promoter usage. EMBO Reports 17: 1304-1313.
91. Zhonghui Zhang, Xiuying Liu, Xinwei Guo, Xiu-Jie Wang* and Xiuren Zhang*. (2016) Arabidopsis AGO3 predominantly recruits 24-nt small RNAs to regulate epigenetic silencing. Nature Plants 2: 16049.
90. Ying Zhang, Guihai Feng, Kai Xu, Libin Wang, Peng Cui, Yuhuan Li, Chenxin Wang, Fei Teng, Jie Hao, Haifeng Wan, Yuanqing Tan, Xiu-Jie Wang* and Qi Zhou*. (2016) A non-invasive method to determine the pluripotent status of stem cells by culture medium microRNA expression detection. Scientific Reports 6: 22380.
89. Xin Li, Xiaolong Cui, Jiaqiang Wang, Yukai Wang, Yufei Li, Leyun Wang, Haifeng Wan, Tianda Li, Guihai Feng, Ling Shuai, Zhikun Li, Qi Gu, Jie Hao, Liu Wang, Xiaoyang Zhao, Zhonghua Liu, Xiu-Jie Wang, Wei Li* and Qi Zhou*. (2016) Generation and application of mouse-rat allodiploid embryonic stem cells. Cell 164(1-2): 279-292.
88. Wen Xiao, Samir Adhikari, Ujwal Dahal, Yusheng Chen, Yajuan Hao, Baofa Sun, Huiying Sun, Ang Li, Xiaoli Ping, Weiyi Lai, Xing Wang, Haili Ma, Chunmin Huang, Ying Yang, Niu Huang, Guibin Jiang, Hailin Wang, Qi Zhou, Xiu-Jie Wang, Yongliang Zhao and Yungui Yang*. (2016) Nuclear m6A reader YTHDC1 regulates mRNA splicing. Molecular Cell 61(4): 507-519.
87. Zhikun Li, Haifeng Wan, Guihai Feng, Leyun Wang, Zhengquan He, Yukai Wang, Xiu-Jie Wang, Wei Li*, Qi Zhou* and Baoyang Hu*. (2016) Birth of fertile bimaternal offspring following intracytoplasmic injection of parthenogenetic haploid embryonic stem cells. Cell Research 26(1): 135-138.
86. Yi Cui, Jin Han, Zhifeng Xiao, Tong Chen, Bin Wang, Bing Chen, Sumei Liu, Sufang Han, Yongxiang Fang, Jianshu Wei, Xiu-Jie Wang, Xu Ma* and Jianwu Dai*. (2016) The miR-20-Rest-Wnt signaling axis regulates neural progenitor cell differentiation. Scientific Reports 6: 23300.
85. Jinrui Chang, Jun Guo, Yue Wang, Yuelong Hou, Weiwei Lu, Jinsheng Zhang, Yanrong Yu, Mingjiang Xu, Xiuying Liu, Xiu-Jie Wang, Youfei Guan, Yi Zhu, Jie Du, Chaoshu Tang and Yongfen Qi*. (2016) Intermedin1-53 attenuates vascular calcification in rats with chronic kidney disease by upregulation of α-Klotho. Kidney International 89(3): 586-600.
84. Handong Su, Yalin Liu, Yongxin Liu, Zhenling Lv, Hongyao Li, Shaojun Xie, Zhi Gao, Junling Pang, Xiu-Jie Wang, Jinsheng Lai, James A. Birchler* and Fangpu Han*. (2016) Dynamic chromatin changes associated with de novo centromere formation in maize euchromatin. The Plant Journal 88(5): 854-866.
2015
83. Yingtao Zhao, Meng Wang, Zhimin Wang, Rongxiang Fang, Xiu-Jie Wang* and Yantao Jia*. (2015) Dynamic and coordinated expression changes of rice small RNAs in response to Xanthomonas oryzae pv. oryzae. Journal of Genetics and Genomics 42(11): 625-637.
82. Claudia Castillogonzalez, Xiuying Liu, Changjun Huang, Changjiang Zhao, Zeyang Ma, Tao Hu, Feng Sun, Yijun Zhou, Xueping Zhou, Xiu-Jie Wang and Xiuren Zhang*. (2015) Geminivirus-encoded TrAP suppressor inhibits the histone methyltransferase SUVH4/KYP to counter host defense. Elife 4: e06671.
81. Ling Shuai, Yukai Wang, Mingzhu Dong, Xuepeng Wang, Lisi Sang, Mei Wang, Haifeng Wan, Guanzheng Luo, Tiantian Gu, Yan Yuan, Chunjing Feng, Fei Teng, Wei Li, Xiuying Liu, Tianda Li, Liu Wang, Xiu-Jie Wang, Xiaoyang Zhao and Qi Zhou*. (2015) Durable pluripotency and haploidy in epiblast stem cells derived from haploid embryonic stem cells in vitro. Journal of Molecular Cell Biology 7(4): 326-337.
80. Yalin Liu, Handong Su, Junling Pang, Zhi Gao, Xiu-Jie Wang, James A. Birchler* and Fangpu Han*. (2015) Sequential de novo centromere formation and inactivation on a chromosomal fragment in maize. Proc. Natl. Acad. Sci. USA 112(11): E1263-71.
79. Tong Chen, Yajuan Hao, Ying Zhang, Miaomiao Li, Meng Wang, Weifang Han, Yongsheng Wu, Ying Lv, Jie Hao, Libin Wang, Ang Li, Ying Yang, Kangxuan Jin, Xu Zhao, Yuhuan Li, Xiaoli Ping, Weiyi Lai, Ligang Wu, Guibin Jiang, Hailin Wang, Lisi Sang, Xiu-Jie Wang*, Yungui Yang* and Qi Zhou*. (2015) m6A RNA methylation is regulated by microRNAs and promotes reprogramming to pluripotency. Cell Stem Cell (Cover Story) 16: 289-301.
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On the cover: In this issue, Chen et al. (289–301) show that m6A modifications on mRNAs are enriched at microRNA target sites, the formation of m6A modification is regulated by microRNAs via a sequence pairing mechanism, and increased m6A formation promotes cell reprogramming to pluripotency. The cover art depicts the formation of m6A on mRNA sequences. m6A (the fire) is formed on adenosine (the beacon towers) within the RRACH motif, with the help of microRNAs (the firewood). |
2014
78. Chuanxi Li, Peng Chen*, Rujing Wang, Xiu-Jie Wang, Yaru Su and Jinyan Li. (2014) PPI-IRO: a two-stage method for protein-protein interaction extraction based on interaction relation ontology. International Journal of Data Mining and Bioinformatics 10(1): 98-119.
77. Xu Zhao, Ying Yang, Baofa Sun, Yue Shi, Xin Yang, Wen Xiao, Yajuan Hao, Xiaoli Ping, Yusheng Chen, Wenjia Wang, Kangxuan Jin, Xing Wang, Chunmin Huang, Yu Fu, Xiaomeng Ge, Shuhui Song, Hyun Seok Jeong, Hiroyuki Yanagisawa, Yamei Niu, Guifang Jia, Wei Wu, Weimin Tong, Akimitsu Okamoto, Chuan He, Jannie M Rendtlew Danielsen, Xiu-Jie Wang and Yungui Yang*. (2014) FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis. Cell Research 24(12): 1403-19.
76. Guanzheng Luo, Wei Yang, Yingke Ma and Xiu-Jie Wang*. (2014) ISRNA: an integrative online toolkit for short reads from high-throughput sequencing data. Bioinformatics 30: 434-436.
75. Yongxin Liu, Meng Wang and Xiu-Jie Wang*. (2014) Endogenous small RNA clusters in plants. Genomics Proteomics & Bioinformatics 12: 64-71.
74. Wei Gao, Haixi Sun, Hongbin Xiao, Guanghong Cui, Matthew L Hillwig, Alana Jackson, Xiao Wang, Ye Shen, Nan Zhao, Liangxiao Zhang, Xiu-Jie Wang*, Reuben J Peters* and Luqi Huang*. (2014) Combining metabolomics and transcriptomics to characterize tanshinone biosynthesis in Salvia miltiorrhiza. BMC Genomics 15: 73.
73. Wei Li, Xin Li, Tianda Li, Minggui Jiang, Haifeng Wan, Guanzheng Luo, Chunjing Feng, Xiaolong Cui, Fei Teng, Yan Yuan, Quan Zhou, Qi Gu, Ling Shuai, Jiahao Sha, Yamei Xiao, Liu Wang, Zhonghua Liu, Xiu-Jie Wang, Xiaoyang Zhao and Qi Zhou*. (2014) Genetic modification and screening in rat using haploid embryonic stem cells. Cell Stem Cell 14: 404-414.
72. Yi Cui, Zhifeng Xiao, Tong Chen, Jianshu Wei, Lei Chen, Lijun Liu, Bing Chen, Xiu-Jie Wang, Xiaoran Li and Jianwu Dai*. (2014) The miR-7 identified from collagen biomaterial-based three-dimensional cultured cells regulates neural stem cell differentiation. Stem Cells and Development 23: 393-405.
71. Lijuan Fu, Zhimin Shi, Guanzheng Luo, Weihong Tu, Xiu-Jie Wang, Zhide Fang and XiaoChing Li*. (2014) Multiple microRNAs regulate human FOXP2 gene expression by targeting sequences in its 3' untranslated region. Molecular Brain 7: 71.
2013
70. Zhicao Zhang, Yi Huang, Xiu-Jie Wang, Meng Wang and Lulin Ma*. (2013) Expression of circulating microRNAs in patients with bladder urothelial carcinoma. Journal of Peking University (Health Sciences) 45(4): 532-536.
69. Huajun Wu, Zhimin Wang, Meng Wang and Xiu-Jie Wang*. (2013) Widespread long noncoding RNAs as endogenous target mimics for microRNAs in plants. Plant Physiology 161: 1875-1884.
68. Ying Zhang, Fei Teng, Guanzheng Luo, Meng Wang, Man Tong, Xiaoyang Zhao, Liu Wang, Xiu-Jie Wang* and Qi Zhou*. (2013) MicroRNA-323-3p regulates the activity of polycomb repressive complex 2 (PRC2) via targeting the mRNA of embryonic ectoderm development (Eed) gene in mouse embryonic stem cells. Journal of Biological Chemistry 288: 23659-23665.
67. Xin Liu, Ying Zhang, Man Tong, Xiuying Liu, Guanzheng Luo, Dongfang Xie, Shaofang Ren, Donghui Bai, Liu Wang, Qi Zhou and Xiu-Jie Wang*. (2013) Identification of a small molecule 1,4-bis-[4-(3-phenoxy-propoxy)-but-2-ynyl]-piperazine as a novel inhibitor of the transcription factor p53. Acta Pharmacologica Sinica 34: 805–810.
66. Wen Li, Wei Yang and Xiu-Jie Wang*. (2013) Pseudogenes: pseudo or real functional elements? Journal of Genetics and Genomics 40: 171-177.
65. Xinmin Zhang, Yuzhen Ma, Xiuying Liu, Qi Zhou and Xiu-Jie Wang*. (2013) Evolutionary and functional analysis of the key pluripotency factor Oct4 and its family proteins. Journal of Genetics and Genomics 40: 399-412.
64. Hongqing Ling*, Shancen Zhao, Dongcheng Liu, Junyi Wang, Hua Sun, Chi Zhang, Huajie Fan, Dong Li, Lingli Dong, Yong Tao, Chuan Gao, Huilan Wu, Yiwen Li, Yan Cui, Xiaosen Guo, Shusong Zheng, Biao Wang, Kang Yu, Qinsi Liang, Wenlong Yang, Xueyuan Lou, Jie Chen, Mingji Feng, Jianbo Jian, Xiaofei Zhang, Guangbin Luo, Ying Jiang, Junjie Liu, Zhaobao Wang, Yuhui Sha, Bairu Zhang, Huajun Wu, Dingzhong Tang, Qianhua Shen, Pengya Xue, Shenhao Zou, Xiu-Jie Wang, Xin Liu, Famin Wang, Yanping Yang, Xueli An, Zhenying Dong, Kunpu Zhang, Xiangqi Zhang, Mingcheng Luo, Jan Dvorak, Yiping Tong, Jian Wang, Huanming Yang, Zhensheng Li*, Daowen Wang*, Aimin Zhang* and Jun Wang*. (2013) Draft genome of the wheat A-genome progenitor Triticum urartu. Nature 496: 87-90.
63. Hongliang Zhu, Yuyi Zhou, Claudia Castillogonzález, Amber Lu, Chunxiao Ge, Yingtao Zhao, Liusheng Duan, Zhaohu Li, Michael J. Axtell, Xiu-Jie Wang and Xiuren Zhang*. (2013) Bidirectional processing of pri-miRNAs with branched terminal loops by Arabidopsis Dicer-like1. Nature Structural & Molecular Biology 20: 1106-1115. (Cover story)
62. Rongchang Li, Jin Tao, Yunbo Guo, Haodi Wu, Ruifeng Liu, Yan Bai, Zhizhen Lv, Guanzheng Luo, Linlin Li, Meng Wang, Huaqian Yang, Wei Gao, Qide Han, Youyi Zhang, Xiu-Jie Wang, Ming Xu* and Shiqiang Wang*. (2013) In vivo suppression of microRNA-24 prevents the transition toward decompensated hypertrophy in aortic-constricted mice. Circulation Research 112: 601-605.
61. Bing Zhang, Zhenling Lv, Junling Pang, Yalin Liu, Xiang Guo, Shulan Fu, Jun Li, Qianhua Dong, Huajun Wu, Zhi Gao, Xiu-Jie Wang and Fangpu Han*. (2013) Formation of a functional maize centromere after loss of centromeric sequences and gain of ectopic sequences. Plant Cell 25(6): 1979-1989.
60. Shulan Fu, Zhenling Lv, Zhi Gao, Huajun Wu, Junling Pang, Bing Zhang, Qianhua Dong, Xiang Guo, Xiu-Jie Wang, James A. Birchler* and Fangpu Han*. (2013) De novo centromere formation on a chromosome fragment in maize. Proc. Natl. Acad. Sci. USA 110: 6033-6036.
59. Guanqun Zheng, John Arne Dahl, Yamei Niu, Peter Fedorcsak, Chunmin Huang, Charles J. Li, Cathrine B. Vågbø, Yue Shi, Wenling Wang, Shuhui Song, Zhike Lu, Ralph P. G. Bosmans, Qing Dai, Yajuan Hao, Xin Yang, Wenming Zhao, Weimin Tong, Xiu-Jie Wang, Florian Bogdan, Kari Furu, Ye Fu, Guifang Jia, Xu Zhao, Jun Liu, Hans E. Krokan, Arne Klungland*, Yungui Yang* and Chuan He*. (2013) ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility. Molecular Cell 10: 18-29.
58. Zhimin Shi, Guanzheng Luo, Lijuan Fu, Zhide Fang, Xiu-Jie Wang and XiaoChing Li*. (2013) miR-9 and miR-140-5p target FoxP2 and are regulated as a function the social context of singing behavior in zebra finches. Journal of Neuroscience 16: 16510-16521.
57. Yamei Niu, Xu Zhao, Yongsheng Wu, Mingming Li, Xiu-Jie Wang and Yungui Yang*. (2013) N6-methyl-adenosine (m6A) in RNA: an old modification with a novel epigenetic function. Genomics Proteomics & Bioinformatics 11: 8-17.
56. Jin Han, Lei Chen, Guanzheng Luo, Bin Dai, Xiu-Jie Wang and Jianwu Dai*. (2013) Three-dimensional culture may promote cell reprogramming. Organogenesis 9: 118-120.
2012
55. Ming Xu*, Haodi Wu, Rongchang Li, Haibo Zhang, Meng Wang, Jin Tao, Xinheng Feng, Yunbo Guo, Sufang Li, Shaoting Lai, Peng Zhou, Linlin Li, Huaqian Yang, Guanzheng Luo, Yan Bai, Jianzhong J. Xi, Wei Gao, Qide Han, Youyi Zhang, Xiu-Jie Wang*, Xu Meng and Shiqiang Wang*. (2012) Mir-24 regulates junctophilin-2 expression in cardiomyocytes. Circulation Research 111: 837-841.
54. Huajun Wu, Zhonghui Zhang, Junyi Wang, Dongha Oh, Maheshi Dassanayake, Binghang Liu, Quanfei Huang, Haixi Sun, Ran Xia, Yaorong Wu, Yinan Wang, Zhao Yang, Yang Liu, Wanke Zhang, Huawei Zhang, Jinfang Chu, Cunyu Yan, Shuang Fang, Jinsong Zhang, Yiqin Wang, Fengxia Zhang, Guodong Wang, Sang Yeol Lee, John M. Cheeseman, Bicheng Yang, Bo Li, Jiumeng Min, Linfeng Yang, Jun Wang*, Chengcai Chu*, Shouyi Chen*, Hans J. Bohnert, Jiankang Zhu*, Xiu-Jie Wang* and Qi Xie*. (2012) Insights into salt tolerance from the genome of Thellungislla salsuginea. Proc. Natl. Acad. Sci. USA 109: 12219-12224.
53. Huajun Wu, Yingke Ma, Tong Chen, Meng Wang* and Xiu-Jie Wang*. (2012) PsRobot: a web-based plant small RNA meta-analysis toolbox. Nucleic Acids Research 40: W22-W28.
52. Yingtao Zhao, Meng Wang, Sanxiong Fu, Weicai Yang, Cunkou Qi and Xiu-Jie Wang*. (2012) Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and developmental-correlated expressions and new small RNA classes. Plant Physiology 158: 813-823.
51. Guanzheng Luo, Markus Hafner, Zhimin Shi, Miguel Brown, Guihai Feng, Thomas Tuschl, Xiu-Jie Wang* and XiaoChing Li*. (2012) Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression. BMC Genomics 13: 727.
50. Wei Li, Ling Shuai, Haifeng Wan, Mingzhu Dong, Meng Wang, Lisi Sang, Chunjing Feng, Guanzheng Luo, Tianda Li, Xin Li, Libin Wang, Qinyuan Zheng, Chao Sheng, Huajun Wu, Zhonghua Liu, Lei Liu, Liu Wang, Xiu-Jie Wang, Xiaoyang Zhao* and Qi Zhou*. (2012) Androgenetic haploid embryonic stem cells produce live transgenic mice. Nature 490: 407-411.
49. Yaoyao Du, Cheng Gao, Ziyi Liu, Li Wang, Bo Liu, Fan He, Tao Zhang, Yue Wang, Xiu-Jie Wang, Mingjiang Xu, Guanzheng Luo, Yi Zhu, Qingbo Xu, Xian Wang* and Wei Kong*. (2012) Upregulation of a disintegrin and metalloproteinase with thrombospondin motifs-7 by miR-29 repression mediates vascular smooth muscle calcification. Arteriosclerosis, Thrombosis, and Vascular Biology 32: 2580-2588.
48. Cui Zhang, Yunyuan Xu, Siyi Guo, Jiaying Zhu, Qing Huan, Huanhuan Liu, Lei Wang, Guanzheng Luo, Xiu-Jie Wang and Kang Chong*. (2012) Dynamics of brassinosteroid response modulated by negative regulator LIC in rice. PLoS Genetics 8: e1002686.
47. Jongchan Woo, Cameron Ross MacPherson, Jun Liu, Huan Wang, Takatoshi Kiba, Matthew A Hannah, Xiu-Jie Wang, Vladimir B Bajic and Nam-Hai Chua*. (2012) The response and recovery of the Arabidopsis thaliana transcriptome to phosphate starvation. BMC Plant Biology 12: 62.
46. Xianwei Song, Pingchuan Li, Jixian Zhai, Ming Zhou, Lijia Ma, Bin Liu, Donghoon Jeong, Mayumi Nakano, Shouyun Cao, Chunyan Liu, Chengcai Chu, Xiu-Jie Wang, Pamela J. Green, Blake C. Meyers and Xiaofeng Cao*. (2012) Roles of DCL4 and DCL3b in rice phased small RNA biogenesis. Plant Journal 69: 462-474.
45. Ning Xu, Yan Li, Yingtao Zhao, Li Guo, Yuanyuan Fang, Jianhua Zhao, Xiu-Jie Wang, Li Huang and Huishan Guo*. (2012) Identification and characterization of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus. PLoS One 7: e35306.
44. Chao Sheng, Qinyuan Zheng, Jianyu Wu, Zhen Xu, Libin Wang, Wei Li, Haijiang Zhang, Xiaoyang Zhao, Lei Liu, Ziwei Wang, Changlong Guo, Huajun Wu, Zhonghua Liu, Liu Wang, Shigang He, Xiu-Jie Wang, Zhiguo Chen* and Qi Zhou*. (2012) Direct reprogramming of sertoli cells into multipotent neural stem cells by defined factors. Cell Research 22: 208-218.
2011
43. Huan Wang, Xiuren Zhang, Jun Liu, Takatoshi Kiba, Jongchan Woo, Tolulope Ojo, Markus Hafner, Thomas Tuschl, Nam-Hai Chua* and Xiu-Jie Wang*. (2011) Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions. Plant Journal 67: 292-304.
42. Hong Cui*, Songtao Zhang, Huijuan Yang, Hao Ji and Xiu-Jie Wang. (2011) Gene expression profile analysis of tobacco leaf trichomes. BMC Plant Biology 11: 76.
41. Mingguang Lei, Yidan Liu, Baocai Zhang, Yingtao Zhao, Xiu-Jie Wang, Yihua Zhou, Kashchandra G. Raghothama and Dong Liu*. (2011) Genetic and genomic evidence that sucrose is a global regulator of plant responses to phosphate starvation in Arabidopsis. Plant Physiology 156: 1116-1130.
40. Hong Liang, Yingtao Zhao, Jieqiong Zhang, Xiu-Jie Wang, Rongxiang Fang* and Yantao Jia*. (2011) Identification and functional characterization of small non-coding RNAs in Xanthomonas oryzae pathovar oryzae. BMC Genomics 12: 87.
39. Chui E. Wong, Yingtao Zhao, Xiu-Jie Wang, Larry Croft, Zhonghua Wang, Farzad Haerizadeh, John S. Mattick, Mohan B. Singh, Bernard J. Carroll and Prem L. Bhalla*. (2011) MicroRNAs in the shoot apical meristem of soybean. Journal of Experimental Botany 62: 2495-2506.
38. Jiali Wang, Dongcheng Liu, Xiaoli Guo, Wenlong Yang, Xiu-Jie Wang, Kehui Zhan and Aimin Zhang*. (2011) Variability of gene expression after polyhaploidization in wheat (Triticum aestivum L.). Genes Genomics Genetics 1: 27-33.
37. Wei Li, Xiaoyang Zhao, Haifeng Wan, Ying Zhang, Lei Liu, Zhuo Lv, Xiu-Jie Wang, Liu Wang* and Qi Zhou*. (2011) iPS cells generated without c-Myc have active Dlk1-Dio3 region and are capable of producing full-term mice through tetraploid complementation. Cell Research 21: 550-553.
36. Man Tong, Zhuo Lv, Lei Liu, Hui Zhu, Qinyuan Zheng, Xiaoyang Zhao, Wei Li, Yibo Wu, Haijiang Zhang, Huajun Wu, Zhikun Li, Fanyi Zeng, Liu Wang, Xiu-Jie Wang, Jiahao Sha* and Qi Zhou*. (2011) Mice generated from tetraploid complementation competent iPS cells show similar developmental features as those from ES cells but are prone to tumorigenesis. Cell Research 21: 1634-1637.
2010
35. Yong Zhang, Jun Liu, Chunshi Jia, Tingting Li, Rimao Wu, Jie Wang, Ying Chen, Xiaoting Zou, Runsheng Chen, Xiu-Jie Wang* and Dahai Zhu*. (2010) Systematic identification and evolutionary features of rhesus monkey small nucleolar RNAs. BMC Genomics 11: 16.
34. Lei Liu, Guanzheng Luo, Wei Yang, Xiaoyang Zhao, Qinyuan Zheng, Zhuo Lv, Wei Li, Huajun Wu, Liu Wang, Xiu-Jie Wang* and Qi Zhou*. (2010) Activation of the imprinted Dlk1-Dio3 region correlates with pluripotency levels of mouse stem cells. Journal of Biological Chemistry (Cover story) 285: 19483-19490.
33. Wei Yang, Qi Zhou and Xiu-Jie Wang*. (2010) Regulation beyond genome sequences: DNA and histone methylation in embryonic stem cells. Frontier of Biology 5: 41-47.
32. Yan Li, Xiuying Liu, Li Huang, Huishan Guo and Xiu-Jie Wang*. (2010) Potential coexistence of both bacterial and eukaryotic small RNA biogenesis and functional related protein homologs in Archaea. Journal of Genetics and Genomics 37: 493-503.
31. Xiahui Xiong, Yabin Lu, Lishu Zhang, Bo Wang, Yingtao Zhao, Xiu-Jie Wang, Xiaofang Huo, Yan Shen, Zicai Liang* and Meihong Chen*. (2010) Discovery of novel cell proliferation-enhancing gene by random siRNA library based combinatorial screening. Combinatorial Chemistry & High Throughput Screening 13: 798-806.
30. Xinyu Jian, Lin Zhang, Guanglin Li, Liang Zhang, Xiu-Jie Wang, Xiaofeng Cao, Xiaohua Fang and Fan Chen*. (2010) Identification of novel stress-regulated microRNAs from Oryza sativa L. Genomics 95: 47-55.
2009
29. Qi Zheng, Yong Zhang, Ying Chen, Ning Yang, Xiu-Jie Wang* and Dahai Zhu*. (2009) Systematic identification of genes involved in divergent skeletal muscle growth rates of broiler and layer chickens. BMC Genomics 10: 87.
28. Xiuying Liu, Guanzheng Luo, Xiujuan Bai* and Xiu-Jie Wang*. (2009) Bioinformatic analysis of microRNA biogenesis and function related proteins in eleven animal genomes. Journal of Genetics and Genomics 36: 591-601.
27. Misook Ha, Jie Lu, Lu Tian, Vanitharani Ramachandran, Kristin D. Kasschau, Elisabeth J. Chapman, James C. Carrington, Xuemei Chen, Xiu-Jie Wang and Z. Jeffrey Chen*. (2009) Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. Proc. Natl. Acad. Sci. USA 106: 17835-17840.
26. Hada Wuriyanghan, Bo Zhang, Wanhong Cao, Biao Ma, Gang Lei, Yunfeng Liu, Wei Wei, Huajun Wu, Lijuan Chen, Haowei Chen, Yangrong Cao, Sijie He, Wanke Zhang, Xiu-Jie Wang, Shouyi Chen and Jinsong Zhang*. (2009) The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice. Plant Cell 21: 1473-1494.
25. Michael I. Besecker, Mallory E. Harden, Guanglin Li, Xiu-Jie Wang and Anthony Griffiths*. (2009) Discovery of herpes B virus-encoded microRNAs. Journal of Virology 83: 3413-3416.
24. Yihua Zhou, Shengben Li, Qian Qian, Dali Zeng, Mu Zhang, Longbiao Guo, Xiangling Liu, Baocai Zhang, Lingwei Deng, Xinfang Liu, Guanzheng Luo, Xiu-Jie Wang and Jiayang Li*. (2009) BC10, a DUF266-containing and golgi-located type II membrane protein, is required for cell-wall biosynthesis in rice (Oryza sativa L.). Plant Journal 57: 446-462.
23. Youhua Huang, Xiaohong Huang, Hong Liu, Jie Gong, Zhengliang Ouyang, Huachun Cui, Jianhao Cao, Yingtao Zhao, Xiu-Jie Wang, Yulin Jiang* and Qiwei Qin*. (2009) Complete sequence determination of a novel reptile iridovirus isolated from soft-shelled turtle and evolutionary analysis of iridoviridae. BMC Genomics 10: 224.
22. Yong Zhang, Jie Wang, Shoujun Huang, Xiaopeng Zhu, Jun Liu, Ning Yang, Dandan Song, Rimao Wu, Wei Deng, Geir Skogerbø, Xiu-Jie Wang, Runsheng Chen* and Dahai Zhu*. (2009) Systematic identification and characterization of chicken (Gallus gallus) ncRNAs. Nucleic Acids Research 37: 6562-6574.
21. Mengbin Ruan, Yingtao Zhao, Zhaohong Meng, Xiu-Jie Wang and Weicai Yang*. (2009) Conserved miRNA analysis in Gossypium hirsutum through small RNA sequencing. Genomics 94: 263-268.
20. Yanwei Wang, Pingchuan Li, Xiaofeng Cao, Xiu-Jie Wang, Aimin Zhang and Xia Li*. (2009) Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules. Biochemical Biophysical Research Communications 378: 799-803.
2008
19. Qi Zheng and Xiu-Jie Wang*. (2008) GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis. Nucleic Acids Research 36: W358-W363.
18. Jinye Mu, Helin Tan, Qi Zheng, Fuyou Fu, Yan Liang, Jian Zhang, Xiaohui Yang, Tai Wang, Kang Chong, Xiu-Jie Wang and Jianru Zuo*. (2008) LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis. Plant Physiology 148: 1042-1054.
17. Falong Lu, Guanglin Li, Xia Cui, Chunyan Liu, Xiu-Jie Wang and Xiaofeng Cao*. (2008) Comparative analysis of JmjC domain-containing proteins reveals the potential histone demethylases in Arabidopsis and rice. Journal of Integrative Plant Biology 50: 886-896.
2007
16. Tao Zhao, Guanglin Li, Shijun Mi, Shan Li, Gregory J. Hannon, Xiu-Jie Wang and Yijun Qi*. (2007) A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes & Development 21: 1190-1203. (*co-corresponding Author)
15. XiaoChing Li*, Xiu-Jie Wang, Jonathan Tannenhauser, Sheila Podell, Piali Mukherjee, Moritz Hertel, Jeremy Biane, Shoko Masuda, Fernando Nottebohm and Terry Gaasterland. (2007) Genomic resources for songbird research and their use in characterizing gene expression during brain development. Proc. Natl. Acad. Sci. USA 104: 6834-6839. (co-first author)
14. Bin Liu, Zhiyu Chen, Xianwei Song, Chunyan Liu, Xia Cui, Xianfeng Zhao, Jun Fang, Wenying Xu, Huiyong Zhang, Xiu-Jie Wang, Chengcai Chu, Xingwang Deng, Yongbiao Xue and Xiaofeng Cao*. (2007) Oryza sativa Dicer-like4 reveals a key role for small interfering RNA silencing in plant development. Plant Cell 19: 2705-2718.
13. Peijin Li, Yonghong Wang, Qian Qian, Zhiming Fu, Mei Wang, Dali Zeng, Baohua Li, Xiu-Jie Wang and Jiayang Li*. (2007) LAZY1 controls rice shoot gravitropism through regulating polar auxin transport. Cell Research 15: 402-410.
12. Xiaoqiang Liu, Xianquan Bai, Xiu-Jie Wang and Chengcai Chu*. (2007) OsWRKY71, a rice transcription factor, is involved in rice defense response. Journal of Plant Physiology 164: 969-979.
2006
11. Huan Wang, Nam-Hai Chua and Xiu-Jie Wang*. (2006) Prediction of trans-antisense transcripts in Arabidopsis thaliana. Genome Biology 7: R92.
10. Yijun Qi, Xingyue He, Xiu-Jie Wang, Oleksiy Kohany, Jerzy Jurka and Gregory J. Hannon*. (2006) Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation. Nature 443: 1008-1012.
9. Can Cui, Anthony Griffiths, Guanglin Li, Lindsey M. Silva, Martha F. Kramer, Terry Gaasterland, Xiu-Jie Wang* and Donald M. Coen*. (2006) Prediction and identification of herpes simplex virus 1-encoded microRNAs. Journal of Virology 80: 5499-5508.
8. Guanglin Li, Shiheng Tao and Xiu-Jie Wang*. (2006) Sequence and epitope analysis of surface proteins of avian influenza H5N1 viruses from Asian patients. Chinese Science Bulletin 51: 472-2481.
7. Jun Liu and Xiu-Jie Wang*. (2006) An integrative analysis of the effects of auxin on jasmonic acid biosynthesis in Arabidopsis thaliana. Journal of Integrative Plant Biology 48: 110-114.
6. Anding Luo, Qian Qian, Hengfu Yin, Xiaoqiang Liu, Changxi Yin, Ying Lan, Jiuyou Tang, Zuoshun Tang, Shouyun Cao, Xiu-Jie Wang, Kai Xia, Xiangdong Fu, Da Luo* and Chengcai Chu*. (2006) EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice. Plant and Cell Physiology 47: 181-191.
2005 and before
5. Xiu-Jie Wang, Terry Gaasterland and Nam-Hai Chua*. (2005) Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana. Genome Biology 6: R30.
4. Xiaoqiang Liu, Xianquan Bai, Qianqian, Xiu-Jie Wang, Mingsheng Chen and Chengcai Chu*. (2005) OsWRKY03, a rice transcriptional activator that functions in defense signaling pathway upstream of OsNPR1. Cell Research 15: 593-603.
3. Xiu-Jie Wang, José L Reyes, Nam-Hai Chua and Terry Gaasterland*. (2004) Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets. Genome Biology 5: R65.
2. Stefan Hoth*, Yoshihisa Ikeda, Michele Morgante, Xiu-Jie Wang, Jianru Zuo, Michael K. Hanafey, Terry Gaasterland, Scott V. Tingey and Nam-Hai Chua. (2003) Monitoring genome-wide changes in gene expression in response to endogenous cytokinin reveals targets in Arabidopsis thaliana. FEBS Letters 554: 373-380.
1. Xiu-Jie Wang, Yickpang Ching, Wingho Lam, Zhong Qi, Mingjie Zhang and Jerry H. Wang*. (2000) Identification of a common protein association region in the neuronal Cdk5 activator. Journal of Biological Chemistry 275: 31763-31769.
授权专利：
1. ZL 202211423334.0；专利名称：人参皂苷 Rh2、麦冬皂苷 D 联合五味子乙素在治疗心肌损伤中的应用；发明人：王秀杰，王猛，谢冬芳，张猛。（国内专利）
2. ZL 202211423427.3；专利名称：麦冬皂苷 D’在治疗抗肿瘤药物引起的心肌损伤中应用；发明人：王秀杰，王猛，谢冬芳，张猛。（国内专利）
3. ZL 202211424100.8；专利名称：异绿原酸C在治疗抗肿瘤药物引起的心肌损伤中的应用；发明人：王秀杰，王猛，谢冬芳，张猛。（国内专利）
4. ZL 202211470949.9；专利名称：一种侵蚀性蛋白酶抑制剂及其应用；发明人：王秀杰，周一新，刘鑫，宋洋，王猛，张豪。（国内专利）
5. ZL 202211335057.8；专利名称：一种人参根瘤菌及其应用；发明人：请求不公布名字，王秀杰，杨洪军，许海玉，王猛，张骆琪，陈少波，李森。（国内专利）
6. ZL 202210436246.8；专利名称：一种用于抑制纤维化的小分子药物及其应用；发明人：肖晗，张幼怡，王秀杰，冯姗，刘鑫。（国内专利）
7. ZL 202210436220.3；专利名称：一种用于抑制纤维化的小分子药物及其应用；发明人：肖晗，张幼怡，王秀杰，冯姗，刘鑫。（国内专利）
8. ZL 202020396109.2；专利名称：一种立体库；发明人：王秀杰，叶岷，王猛，史庆庆。（国内专利）
9. ZL 202020396132.1；专利名称：一种枪头自动整理装置；发明人：王秀杰，叶岷，王猛，史庆庆。（国内专利）
10. ZL 202020396083.1；专利名称：一种自动移液系统；发明人：王秀杰，叶岷，王猛，史庆庆。（国内专利）
11. ZL 202020613497.5；专利名称：一种植物表型组学信息获取系统；发明人：王秀杰，王猛，郭庆华，刘永进，史庆庆，庞树鑫，吴陈铭，韩义恒。（国内专利）
12. ZL 202010219001.0；专利名称：一种枪头自动整理方法；发明人：王秀杰，叶岷，王猛、史庆庆。（国内专利）
13. ZL 202010219949.6；专利名称：一种自动移液系统及其控制方法；发明人：王秀杰，叶岷，王猛，史庆庆。（国内专利）
14. ZL 201980090217.7；专利名称：三维生物打印系统和方法；发明人：王秀杰，王昌凌，刘永进，张泽宇，史庆庆。（国内专利）
15. ZL 201920396573.9；专利名称：一种生物3D打印温控系统；发明人：刘永进，吴陈铭，王秀杰，王昌凌，史庆庆，张泽宇。（国内专利）
16. ZL 201920830095.8；专利名称：植物表型采集系统；发明人：刘永进，吴陈铭，韩义恒，王秀杰，王猛。（国内专利）
17. PCT/CN2019/072991；专利名称：Systems and methods for three-dimensional bioprinting；发明人：王秀杰，王昌淩，刘永进，张泽宇，史庆庆。（PCT专利）
18. PCT/CN2018/100721；专利名称：Compositions and methods for assessing or improving brain function, learning ability or memory；发明人：王秀杰，张泽宇，王猛，谢冬芳，黄增辉。（PCT专利）
19. ZL 201822199624.7；专利名称：一种生物3D打印培养一体化装置；发明人：刘永进，吴陈铭，王秀杰，王昌凌，戴澄恺，方国鑫，史庆庆，张泽宇。（国内专利）
20. ZL 201880096673.8；专利名称：评估或改善脑功能、学习能力或记忆力的组合物和方法；发明人：王秀杰，张泽宇，王猛，谢冬芳，黄增辉。（国内专利）
21. ZL 201820044372.8；专利名称：一种生物3D打印装置；发明人：刘永进，吴陈铭，李彦余，王秀杰，张泽宇，史庆庆。（国内专利）
22. ZL 201580074289.4；专利名称：miRNA对m6A修饰水平的调控方法及其应用；发明人：周琪，杨运桂，王秀杰，陈同，张映，郝亚娟，李苗苗，王猛。（国内专利）
23. ZL 201410394740.8；专利名称：一种诱导多能干细胞的培养基及其用途；发明人：周琪，王秀杰，顾奇，郝捷，韩伟方，刘鑫，王磊，王柳。（国内专利）
24. ZL 201310217064.2；专利名称：哌嗪衍生物作为p53分子调节剂的用途；发明人：王秀杰，周琪，刘鑫，张映，佟曼，郝捷，王柳，顾奇，谢冬芳，白冬辉，任少芳。（国内专利）
25. ZL 201210348202.6；专利名称：ath-eTM160在抑制microRNA160功能中的应用；发明人：王秀杰，王猛，吴华君，王志敏。（国内专利）
26. ZL 201210347712.1；专利名称：一种RNA及产生该RNA的基因在调控水稻根系发育中的应用；发明人：王秀杰，王猛，储成才，曹守云。（国内专利）
27. ZL 201110129687.2；专利名称：miR-24用于治疗或诊断心衰或患心衰倾向或者改善心肌细胞功能的方法；发明人：王秀杰，徐明，王世强，王猛，李素芳，骆观正。（国内专利）
28. ZL 201110416562.0；专利名称：启动子miR390及其应用；发明人：王秀杰，王猛，储成才，曹守云。（国内专利）
29. HK1163162；专利名称：用于鉴定或调控细胞多能性的关键基因、MICRORNA、其它非编码RNA或其组合；发明人：周琪，王秀杰，王柳，刘蕾，赵小阳，杨维，骆观正，吕卓，郑钦元，吴华君，李伟。（中国香港专利）
30. ZL 201010142746.8；专利名称：用于鉴定或调控细胞多能性的关键基因、MICRORNA、其它非编码RNA或其组合；发明人：周琪，王秀杰，王柳，刘蕾，赵小阳，杨维，骆观正，吕卓，郑钦元，吴华君，李伟。（国内专利）
31. ZL 201110416562.0；专利名称：启动子miR390及其应用；发明人：王秀杰，王猛，储成才，曹守云。（国内专利）
32. ZL 201010183227.6；专利名称：启动子miR172c及其应用；发明人：王秀杰，王猛，储成才，曹守云。（国内专利）
33. ZL 201010183307.1；专利名称：启动子AFB4及其应用；发明人：王秀杰，王猛，储成才，曹守云。（国内专利）
授权软著：
1. 2026SR0343180；软件名称：CellClick单细胞组学数据在线分析平台[简称：CellClick] V1.0；完成人：王秀杰、王猛、石磊、戴敏。
2. 2023SR0244931；软件名称：单细胞组学数据标记基因鉴定软件[简称：COSG] V1.0；完成人：王秀杰，裴小兵，戴敏。
3. 2023SR0406563；软件名称：中药复方功效解析挖掘工具软件V1.0；完成人：王秀杰，王猛，石磊，史庆庆。
4. 2013SR064503；软件名称：高通量测序数据分析的生物信息学在线科研软件；完成人：王秀杰，骆观正。
